Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0548
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   5.3  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   9.2  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   9.2  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    25   9.2  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 541 SSKQHQS*NSLDPFTYRNSWE*NCGSNGL 627
           +S    S N+ DP +Y  +W   C +NG+
Sbjct: 343 ASHLEASTNTSDPLSYHKAWHLVCSANGI 371


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 403 NFRQLINAIHSPVNTEVSGGSLC 335
           NF +++  +H P   EV+ G LC
Sbjct: 87  NFSKIVAKLHEPCTHEVNYGGLC 109


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 393 CLKFIMQHSINYSAIFSDCSSAIQAISKN 479
           C+K  +Q   N S I+++    ++ ISKN
Sbjct: 40  CVKVRLQSQSNVSPIYNNALDCVKKISKN 68


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 321 NHYKLHKLPPETSVFTGECIALISCLKFIMQHSINYSAIFS-DCSSAIQAISKNPIKNCL 497
           N Y+L+ +P        E   L+S  K ++        + + DC + +  +S+   KNC+
Sbjct: 290 NSYQLYLIPGYARSRKNEQPILLSSRKCVLTDEEEPPCLMTADCCAGVAFLSRGAPKNCI 349


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 GLEKNTKNANLKFLNMVEEKWPRWNLFSP 261
           G ++NT+   + + N++  +WP W + +P
Sbjct: 46  GYDENTEVEKILWANVIIYQWPGWWMGTP 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,204
Number of Sequences: 5004
Number of extensions: 61580
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)