Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0548
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_16505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   29   2.4  
SB_59543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)                       27   9.7  

>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 339  KLPPETSVFTGECIALISCLKFIM 410
            ++PP+T+ F   C+AL SCL  ++
Sbjct: 1443 RIPPDTTAFQDHCVALQSCLLLLL 1466


>SB_16505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 354 TSVFTGECIALISCLKFIMQHSINYSAIFSDCSSAIQAISKNPIKNCLE 500
           T +FT      + CLK +++H  N +    D +SA+   ++    NC+E
Sbjct: 188 TPLFTAAQYGKVDCLKALIKHKANLNFCTIDGASALFIAAQEGNTNCVE 236


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 510 TADFLNNSLSDSL 472
           TADFLNNSLSDSL
Sbjct: 426 TADFLNNSLSDSL 438


>SB_59543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 333 ICNDLRLGDRRQHQCYHLKLIS 268
           IC+D+  G+ ++  C HLK++S
Sbjct: 65  ICSDVDFGEVKEASCKHLKMLS 86


>SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)
          Length = 196

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 432 AIFSDCSSAIQAISKNPIKNCLENPLFV*SKTCCSPVIKTTSKLK*FGSLHIQEFLGMKL 611
           ++ S  S   + I+ +P+K+    P    + TC  P +  + +L    ++ +   LG +L
Sbjct: 25  SLVSQISKTSKQINGDPLKDNSSTPSTTQAATCSDPPLTMSLQLNVIWTVMVGLSLGTRL 84

Query: 612 W 614
           W
Sbjct: 85  W 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,237,822
Number of Sequences: 59808
Number of extensions: 423125
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)