Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0548
(639 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 43 3e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 38 0.009
AE014296-397|AAF47599.2| 1019|Drosophila melanogaster CG5691-PA ... 29 4.0
AY071463-1|AAL49085.1| 146|Drosophila melanogaster RE54375p pro... 29 5.3
AE014296-2259|AAF49831.1| 146|Drosophila melanogaster CG14112-P... 29 5.3
AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p pro... 28 9.3
AY070918-1|AAL48540.1| 437|Drosophila melanogaster RE02644p pro... 28 9.3
AY058406-1|AAL13635.1| 1007|Drosophila melanogaster GH18129p pro... 28 9.3
AL031863-7|CAA21313.1| 1007|Drosophila melanogaster EG:EG0003.5 ... 28 9.3
AE014296-497|AAF47673.1| 437|Drosophila melanogaster CG1246-PB ... 28 9.3
AE013599-2355|AAF57945.1| 1007|Drosophila melanogaster CG5859-PA... 28 9.3
AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,... 28 9.3
AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,... 28 9.3
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 43.2 bits (97), Expect = 3e-04
Identities = 36/129 (27%), Positives = 58/129 (44%)
Frame = +3
Query: 84 PISLNSIRHPPYFQNII*GPLPFPHSLSKHRFRKKYKKRQLKIFKHGRRKMATVEFIFTD 263
PI L+ + P N+I SL H+ + + K+++H + + T FIFTD
Sbjct: 901 PIKLHKNKPPWTLPNLI------DTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTD 954
Query: 264 ASKLVSNGNTGAAFYHPNANHYKLHKLPPETSVFTGECIALISCLKFIMQHSINYSAIFS 443
SK+ T + + K LPP +SV T E IA++ ++ + I S
Sbjct: 955 GSKI---NYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKF-IICS 1010
Query: 444 DCSSAIQAI 470
D SA+ +I
Sbjct: 1011 DSLSAVDSI 1019
Score = 36.7 bits (81), Expect = 0.026
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 545 QNNIKVEIVWIPSHTGILGNETVDQ 619
Q+ K++I+WIP H+GI GNE DQ
Sbjct: 1038 QHAPKIKIMWIPGHSGIKGNELADQ 1062
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 38.3 bits (85), Expect = 0.009
Identities = 29/105 (27%), Positives = 49/105 (46%)
Frame = +3
Query: 156 HSLSKHRFRKKYKKRQLKIFKHGRRKMATVEFIFTDASKLVSNGNTGAAFYHPNANHYKL 335
++ K R +Y+KR F + + +I+TD SK+ G T A N
Sbjct: 937 NAAKKDTGRLEYQKR----FMSAQEDLGVKNWIYTDGSKVT--GATTFAVVDSNRKIIAG 990
Query: 336 HKLPPETSVFTGECIALISCLKFIMQHSINYSAIFSDCSSAIQAI 470
+LP S+FT E A++ +F +++ S I +D S++ AI
Sbjct: 991 GRLPSYNSIFTAEAFAILKACQFASKNA-GKSVICTDSLSSLSAI 1034
Score = 33.1 bits (72), Expect = 0.33
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 557 KVEIVWIPSHTGILGNETVDQ 619
K+ ++W+PSH GI GNE D+
Sbjct: 1057 KITLLWVPSHQGIHGNELADK 1077
>AE014296-397|AAF47599.2| 1019|Drosophila melanogaster CG5691-PA
protein.
Length = 1019
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 76 DSFQSPLIQSDTLPIFKISFKALCHSPTVYL 168
D +SP+ D L I+K ++KAL ++P + L
Sbjct: 527 DKLKSPVFHMDLLNIYKDNYKALLNTPAMLL 557
>AY071463-1|AAL49085.1| 146|Drosophila melanogaster RE54375p
protein.
Length = 146
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 153 PHSLSKHRFRKKYKKRQLKIFKHGRRKMATVEF 251
PH + H KK KKR LK RRK ATV F
Sbjct: 26 PHKVKTHDPLKKQKKRALKKL---RRKSATVNF 55
>AE014296-2259|AAF49831.1| 146|Drosophila melanogaster CG14112-PA
protein.
Length = 146
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 153 PHSLSKHRFRKKYKKRQLKIFKHGRRKMATVEF 251
PH + H KK KKR LK RRK ATV F
Sbjct: 26 PHKVKTHDPLKKQKKRALKKL---RRKSATVNF 55
>AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p
protein.
Length = 333
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 545 QNNIKVEIVWIPSHTGILGNETVDQM 622
+NNI V+ ++ +H GI GNE D++
Sbjct: 295 ENNITVKWNYVEAHKGIEGNEMADKL 320
>AY070918-1|AAL48540.1| 437|Drosophila melanogaster RE02644p
protein.
Length = 437
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 438 FSDCSSAIQAISKNPIKNCLENPLFV*SKTCCSPVIKTTSK 560
F DC + S+NP K +E F + C PV+K +
Sbjct: 37 FRDCPDGVTDFSENPFKYAMELIYFA-QEECGEPVLKVADE 76
>AY058406-1|AAL13635.1| 1007|Drosophila melanogaster GH18129p
protein.
Length = 1007
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 148 HSPTVYLNIGLEKNTKNANLKFLNMVEEKWPRWNL 252
HSP GL+ N K LK L + W +W+L
Sbjct: 104 HSPQRPAEKGLQLNRKQLALKILELKVATWLKWDL 138
>AL031863-7|CAA21313.1| 1007|Drosophila melanogaster EG:EG0003.5
protein.
Length = 1007
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 148 HSPTVYLNIGLEKNTKNANLKFLNMVEEKWPRWNL 252
HSP GL+ N K LK L + W +W+L
Sbjct: 104 HSPQRPAEKGLQLNRKQLALKILELKVATWLKWDL 138
>AE014296-497|AAF47673.1| 437|Drosophila melanogaster CG1246-PB
protein.
Length = 437
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 438 FSDCSSAIQAISKNPIKNCLENPLFV*SKTCCSPVIKTTSK 560
F DC + S+NP K +E F + C PV+K +
Sbjct: 37 FRDCPDGVTDFSENPFKYAMELIYFA-QEECGEPVLKVADE 76
>AE013599-2355|AAF57945.1| 1007|Drosophila melanogaster CG5859-PA
protein.
Length = 1007
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 148 HSPTVYLNIGLEKNTKNANLKFLNMVEEKWPRWNL 252
HSP GL+ N K LK L + W +W+L
Sbjct: 104 HSPQRPAEKGLQLNRKQLALKILELKVATWLKWDL 138
>AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,
isoform A protein.
Length = 333
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 545 QNNIKVEIVWIPSHTGILGNETVDQM 622
+NNI V+ ++ +H GI GNE D++
Sbjct: 295 ENNITVKWNYVEAHKGIEGNEMADKL 320
>AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,
isoform B protein.
Length = 314
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 545 QNNIKVEIVWIPSHTGILGNETVDQM 622
+NNI V+ ++ +H GI GNE D++
Sbjct: 276 ENNITVKWNYVEAHKGIEGNEMADKL 301
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,968,931
Number of Sequences: 53049
Number of extensions: 645201
Number of successful extensions: 1249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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