Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0548
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   0.27 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.47 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 300 AFYHPNANHYKLHKLPPETSVFTGECIALISCLKFIMQHSINY 428
           A YHP   HY+        S+F    IALI  + F     INY
Sbjct: 135 AIYHP-LRHYRSGLKRAIRSIFGAWLIALIFAMPFATYVDINY 176


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 211 ILSWRFLYFFLNLCLDKLWGN 149
           IL+W   YFF+++  +  WG+
Sbjct: 80  ILAWAIFYFFMSMRSELPWGS 100


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 363 ILRFLGVVCAIC--NDLRLGDRRQHQ 292
           I+  +G++CA+C  N ++  +RR ++
Sbjct: 206 IVELIGIICALCLANSIKNAERRGYR 231


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
 Frame = +3

Query: 279 SNGNTGAAFYHPNANHYKLH------KLPPET 356
           +N N G  F H    HY  H       LPPET
Sbjct: 265 NNNNNGDMFCHTGLGHYGHHPDPGEVDLPPET 296


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/10 (70%), Positives = 9/10 (90%), Gaps = 1/10 (10%)
 Frame = +2

Query: 239 HGGIYFH-RC 265
           HGG+Y+H RC
Sbjct: 12  HGGLYYHQRC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,606
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)