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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0548
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    29   2.0  
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P...    29   3.4  
At5g10060.1 68418.m01165 expressed protein                             28   6.0  
At2g43990.1 68415.m05470 expressed protein                             28   6.0  
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    28   6.0  

>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 285 GNTGAAFYHPNANHYKLHKLPPETSVFTGECIALISCLKFIMQHSINYSAIFSDCSSAIQ 464
           G+    F HP+  H+ L+ +PPE       C    S +   ++    Y   F DC+   Q
Sbjct: 476 GSISEPFVHPSHPHHPLYYIPPEEEKQCNGCDNWSSLVLTCIESGCRYFLCF-DCARLPQ 534

Query: 465 AI 470
            +
Sbjct: 535 VV 536


>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At4g03300
          Length = 1201

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 177  FRKKYKKRQLKIFKHGRRKMATVEFIFTDASKLVSN 284
            +R+KY    + I++HG+R+  TV F++      V N
Sbjct: 1149 YRQKYS---VDIYEHGKREAGTVHFVYRTLGNCVHN 1181


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 101 NPTPSLFSKYHLRPSAIPPQFI 166
           N TP+   +YH+ P+  PPQF+
Sbjct: 381 NQTPTTQGQYHVIPNPPPPQFL 402


>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 393 CLKFIMQHSINYSAIFSDCSSAIQAISKNPIKNCLENP 506
           C +F++ HS + S+  S  SS++    + P+++  +NP
Sbjct: 70  CHRFLLSHSFSSSS--SSSSSSLGVFPRRPVRSVAKNP 105


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 485 KELFRKSAVCIIKNLLFTCHQNNIKVEIVWIPSHTGILGNETVDQMG 625
           + L RK  VC    ++  C  +N+K+E VW       + N+ V+Q G
Sbjct: 823 RSLIRKGDVC---GIIDPCIASNVKIESVW---RVAEVANQCVEQRG 863


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,991
Number of Sequences: 28952
Number of extensions: 310217
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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