BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0548 (639 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 29 2.0 At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 29 3.4 At5g10060.1 68418.m01165 expressed protein 28 6.0 At2g43990.1 68415.m05470 expressed protein 28 6.0 At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr... 28 6.0 >At4g11550.1 68417.m01852 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 668 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/62 (25%), Positives = 26/62 (41%) Frame = +3 Query: 285 GNTGAAFYHPNANHYKLHKLPPETSVFTGECIALISCLKFIMQHSINYSAIFSDCSSAIQ 464 G+ F HP+ H+ L+ +PPE C S + ++ Y F DC+ Q Sbjct: 476 GSISEPFVHPSHPHHPLYYIPPEEEKQCNGCDNWSSLVLTCIESGCRYFLCF-DCARLPQ 534 Query: 465 AI 470 + Sbjct: 535 VV 536 >At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At4g03300 Length = 1201 Score = 28.7 bits (61), Expect = 3.4 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 Query: 177 FRKKYKKRQLKIFKHGRRKMATVEFIFTDASKLVSN 284 +R+KY + I++HG+R+ TV F++ V N Sbjct: 1149 YRQKYS---VDIYEHGKREAGTVHFVYRTLGNCVHN 1181 >At5g10060.1 68418.m01165 expressed protein Length = 469 Score = 27.9 bits (59), Expect = 6.0 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 101 NPTPSLFSKYHLRPSAIPPQFI 166 N TP+ +YH+ P+ PPQF+ Sbjct: 381 NQTPTTQGQYHVIPNPPPPQFL 402 >At2g43990.1 68415.m05470 expressed protein Length = 632 Score = 27.9 bits (59), Expect = 6.0 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +3 Query: 393 CLKFIMQHSINYSAIFSDCSSAIQAISKNPIKNCLENP 506 C +F++ HS + S+ S SS++ + P+++ +NP Sbjct: 70 CHRFLLSHSFSSSS--SSSSSSLGVFPRRPVRSVAKNP 105 >At1g67720.1 68414.m07728 leucine-rich repeat family protein / protein kinase family protein contains similarity to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins PF00069: Protein kinase domain and PF00560: Leucine Rich Repeat Length = 929 Score = 27.9 bits (59), Expect = 6.0 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 485 KELFRKSAVCIIKNLLFTCHQNNIKVEIVWIPSHTGILGNETVDQMG 625 + L RK VC ++ C +N+K+E VW + N+ V+Q G Sbjct: 823 RSLIRKGDVC---GIIDPCIASNVKIESVW---RVAEVANQCVEQRG 863 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,543,991 Number of Sequences: 28952 Number of extensions: 310217 Number of successful extensions: 691 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 691 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1314848736 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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