Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0547
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -3

Query: 616 RIHSQYCVFFFLNT*GNNFIIERLN*ANFVFKLFFFVAD*-ICLHKTN-NVHFELILK*F 443
           RI +  C  F ++    NF++ + +    V  L FF+ +  I +      + F + LK F
Sbjct: 48  RIAADICYSFCVSCMKTNFLVSQFSKKLIVKNLSFFLLEGSITMGIIRATIAFLITLKRF 107

Query: 442 SCYLVTNFLIRCNWQPRGLARILIPVLC 359
                  F    NW+   L  I+IP+LC
Sbjct: 108 IATFFPTFFHN-NWRKIPLYWIIIPILC 134


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   FFFFFYNFILRCKFIRITIFHTNFLV 81
           FF F+ N +    +++I +FH NF++
Sbjct: 41  FFAFYINSVCLKVYLKIQLFHYNFII 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,025
Number of Sequences: 27780
Number of extensions: 270865
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)