Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IE75 Cluster: Microfibril-associated protein homologu...    34   2.2  
UniRef50_Q8ZQ34 Cluster: Putative inner membrane protein; n=3; S...    33   3.8  
UniRef50_Q7RLU4 Cluster: Putative uncharacterized protein PY0244...    33   6.6  
UniRef50_Q332H3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  
UniRef50_Q7M449 Cluster: Cryptogene protein G4; n=1; Leishmania ...    32   8.7  
UniRef50_Q6IKN4 Cluster: HDC12022; n=1; Drosophila melanogaster|...    32   8.7  
UniRef50_O58486 Cluster: Putative uncharacterized protein PH0774...    32   8.7  

>UniRef50_Q8IE75 Cluster: Microfibril-associated protein homologue,
           putative; n=4; Plasmodium|Rep: Microfibril-associated
           protein homologue, putative - Plasmodium falciparum
           (isolate 3D7)
          Length = 490

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 243 KEVKIQNNT*LSNQSQKSMNALFAAAKYH*QNAYLDDLFVSAHEDTKYRYYNAP 404
           KE+ IQ+N  L N+ +K    +    KY+ +  +  DLF    E+   R YN P
Sbjct: 367 KEI-IQDNKTLPNKEKKKKRKMLFMQKYYHKGGFYQDLFEEGKEEIYLRDYNEP 419


>UniRef50_Q8ZQ34 Cluster: Putative inner membrane protein; n=3;
           Salmonella|Rep: Putative inner membrane protein -
           Salmonella typhimurium
          Length = 386

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +3

Query: 291 KSMNALFAAAKYH*QNAYLDDLFVSAHEDTK-----YRYYNAPKKKKFFLVYFIKTVLLL 455
           ++M  +      H  + Y  D+  +A ++++     Y Y+N P K      YF   ++ +
Sbjct: 150 ETMVLITGGVNEHIFDKYFIDIAAAAADESEKNKVIYNYFNKPAKD-----YFFNKIVFI 204

Query: 456 YNFSERYWTNASSTP 500
           YN  E  W NA   P
Sbjct: 205 YNAKENTWKNAGELP 219


>UniRef50_Q7RLU4 Cluster: Putative uncharacterized protein PY02445;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY02445 - Plasmodium yoelii yoelii
          Length = 424

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 405 KKKKFFLVYFIKTVLLLYNFSERYW 479
           KK+KFF  Y+ K +L++ N  +RYW
Sbjct: 18  KKRKFFKNYYDKFILMIMNSLDRYW 42


>UniRef50_Q332H3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phage c-st|Rep: Putative uncharacterized
           protein - Clostridium botulinum C bacteriophage
          Length = 187

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 164 DSMSSLINPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKVSLTKRI 343
           D ++ LIN    EQ LKA+   +GE  +   +K+ +  +PK+++      C  ++  K I
Sbjct: 124 DEINKLINQEILEQILKAIRSHMGEWNKDYKTKREVLPKPKTRMERFVHMCDYLASRKSI 183


>UniRef50_Q7M449 Cluster: Cryptogene protein G4; n=1; Leishmania
           tarentolae|Rep: Cryptogene protein G4 - Leishmania
           tarentolae (Sauroleishmania tarentolae)
          Length = 169

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -2

Query: 416 FFFFWCIV---ISVFGVFVSTHKEVVQVCVLLMILCCSEKRIH*LLTLVRELGIVLNFYL 246
           F FF+C+    + V+ ++++     V VC ++++L C +  +  L T++     +  F++
Sbjct: 24  FCFFFCLFDLCVMVYFIYIAFVCLFVLVCYVVILLLCFDCIVFFLFTVIIIFFFLFIFWV 83

Query: 245 FFFLL 231
           F FLL
Sbjct: 84  FIFLL 88


>UniRef50_Q6IKN4 Cluster: HDC12022; n=1; Drosophila
           melanogaster|Rep: HDC12022 - Drosophila melanogaster
           (Fruit fly)
          Length = 123

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 179 LINPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKS--KVNECAFRCSKVSLTKRIPGR 352
           L+N  +   PL+  N   G  K  K +K+   L+  S  +V  C   C  +   K+I   
Sbjct: 35  LLNDTRKSNPLEEQNAARGTHKTSKQAKRKRKLKHNSFGRVCLCESVCPNLLRPKQIGKL 94

Query: 353 PLCECSRRHQIQILQCT 403
            +  CS  H +++  CT
Sbjct: 95  SMPTCSNFHVLRLSLCT 111


>UniRef50_O58486 Cluster: Putative uncharacterized protein PH0774;
           n=4; Thermococcaceae|Rep: Putative uncharacterized
           protein PH0774 - Pyrococcus horikoshii
          Length = 410

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 131 LEHIFATSLRPDSMSSLINPIKPEQPLKAMND--EIGEKKRGKNSKQYLALEPKSKVNEC 304
           +EH+  T L P +    I+P+  ++  KA+ +  ++G K    +   Y   EPKSK  E 
Sbjct: 307 VEHLARTRLPPRAQIIFISPLLTQESEKAIFELYKLGYKIVVLSPNPYSLREPKSKEEEI 366

Query: 305 AFRCSKVSLTKRI 343
           A R   +    RI
Sbjct: 367 AIRILSLKRMARI 379


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,514,751
Number of Sequences: 1657284
Number of extensions: 9645332
Number of successful extensions: 25582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25572
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)