Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.27 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.27 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   0.84 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   5.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 324 YH*QNAYLDDLFVSAHEDTKYRYYNAPKKKKFFLVYFIKTVL 449
           Y+ Q   L DL+ S   D+ Y + N    +K    +++ TVL
Sbjct: 351 YNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVL 392


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 324 YH*QNAYLDDLFVSAHEDTKYRYYNAPKKKKFFLVYFIKTVL 449
           Y+ Q   L DL+ S   D+ Y + N    +K    +++ TVL
Sbjct: 243 YNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVL 284


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 277 RTKVKSQ*MRFSLQQSIINKTHTWTTSL*VLTKTPNTDITMHQKKKNS 420
           R K + Q  + + QQS+   +     S  +LTKT  T ++++     S
Sbjct: 121 RAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNNTSTS 168


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 577 FKKVLS*IPRVLMINWVPHMWILI 506
           F+ ++  I R    N+ PH W+L+
Sbjct: 284 FRYLMKGIDRADSFNFNPHKWLLV 307


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 342 YLDDLFVSAHEDTKYRYYNAPKKKKFFLVYFIKTVLLL 455
           Y+DDLF    E +K+  +         L++     L++
Sbjct: 218 YIDDLFFFRFEKSKFEPFLISNISLVSLIFLFNCTLII 255


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 450 LLYNFSERYWTNAS 491
           + +N  ER+W+NA+
Sbjct: 258 ITHNDDERFWSNAT 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,302
Number of Sequences: 336
Number of extensions: 2556
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)