Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    30   0.22 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.7  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    26   3.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.7  
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    25   6.2  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   6.2  

>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 128 FLEHIFATSLRPDSMSSLINPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECA 307
           ++E +   SL+ +S S    P+ PEQ    +   I +++R ++S + L  E    +++ A
Sbjct: 177 YVEEVDEKSLKNESSSDEFEPVVPEQ----LETPISKRRRSRSSAKNLEKESTMNLDDHA 232

Query: 308 FRCSKVSLTKRIPGR 352
            R     L K IP R
Sbjct: 233 PREMFDCLDKPIPWR 247


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 407  FWCIVISVFGVFVSTHKEVVQVCVLLMILCCSEKRIH*LLTLVRELGIVLNFYLFFFLLS 228
            FW ++I V       HK+   V V+   L     RIH L++  R   +    +L F   S
Sbjct: 942  FWPLIIRVSESAFKMHKDGHNVKVVERYLRTVFLRIHFLISEWRWEDVAQILFLIFDFFS 1001

Query: 227  HR 222
            HR
Sbjct: 1002 HR 1003


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 215 AMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKVSLTKRIPGRPLCE 364
           A N E  +KK+ K+SK+     P+ + N      SK+ + K+ P   +C+
Sbjct: 42  ASNGEKKKKKKKKSSKKKKT--PQEQTNPPTVGLSKIFVNKKYPVGEVCD 89


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 155  LRPDSMSSLINPIKPEQPLKAMNDEIGEKKRGKNSKQYL 271
            L P S +  ++P+  E  L+AM      K RGK SK+Y+
Sbjct: 1953 LPPASNNRKVDPL--EDILQAMPPPTTRKARGKTSKRYV 1989


>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 300 NALFAAAKYH*QNAYLDDLFVSAHEDTKYRYYNAPKKKKFFLVYFIKTVLLL 455
           NA    + Y       DDL +  ++DT+      PK + +  VY I+  + L
Sbjct: 25  NAYVHLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQL 76


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 206 PLKAMNDEIGEKKRGKNSKQ 265
           PLK  NDEI E K+G   K+
Sbjct: 402 PLKKRNDEINELKKGFTMKK 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,124
Number of Sequences: 5004
Number of extensions: 43748
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)