Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0932 - 32841331-32842242                                         30   1.6  
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    29   2.1  

>02_05_0932 - 32841331-32842242
          Length = 303

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 155 LRPDSMSSLI-NPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKVSL 331
           +RPD   SL+  P +P  P+     ++ EKKRG+   +  A          A  C++ S 
Sbjct: 85  VRPDPQPSLLLPPPQPPPPMPESTGDVAEKKRGRRKNKNGAKSAPFACLLNALLCNRRSA 144

Query: 332 TKRIPGRP 355
               P  P
Sbjct: 145 RSAEPTTP 152


>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 556 IPRVLMINWVPHMWILIQNGVEEAFVQY 473
           I R L  ++ PHMW+ + +G+E  F+ Y
Sbjct: 196 IMRELSKSFKPHMWVNVHSGMEALFMPY 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,955
Number of Sequences: 37544
Number of extensions: 242557
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)