Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34523| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)                29   2.1  
SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)                 29   2.8  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       28   5.0  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.0  

>SB_34523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +2

Query: 146 ATSLRPDSMSSLINPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKV 325
           A  L+P   + L  P++P   L  M D+ G K R    K+      K++VN    +    
Sbjct: 82  AKELKPMKKAGL-TPLRPPPHLNTMEDDDGHKARMNKLKRARIRLAKNRVNPEVSKPFLK 140

Query: 326 SLTKRIPGRPLCE 364
           SL    PG   CE
Sbjct: 141 SLPDATPGAVWCE 153


>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
          Length = 592

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 263 QYLALEPKSKVNECAFRCSK--VSLTKRIPGRPLCECSRRHQIQILQCTKKKKILFSLFY 436
           +YLA  P +K+++  F   +    +      R  C C     + +L  + K+K+L S   
Sbjct: 91  KYLAENPNAKISQAVFYKMRPHYMMLASFACRDTCFCQHHQNMALLLRSMKRKLLISTGN 150

Query: 437 QDCFI 451
            D FI
Sbjct: 151 PDSFI 155


>SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)
          Length = 325

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 387 CIWCLREHSQRGRPGMR 337
           C WC+ E   RG PG R
Sbjct: 290 CCWCVNERKSRGEPGSR 306


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 185 NPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKVSLTK 337
           N +   +P   +N EIG+ K  K+ +   A+ P  K  +   RC +   TK
Sbjct: 594 NQVDAAEPQSNINKEIGKAKTTKSRQPASAISPTPKSEKDRTRCIETISTK 644


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = +2

Query: 170 MSSLINPIKPEQPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNE------CAFRCSKVSL 331
           MS  +N I   QP+K +   +G+       +  L L     V+       C  +  + + 
Sbjct: 256 MSDEVNRIHTNQPVKGLGSVVGKDNLFSFCRNSLDLWKIEHVHSVFTTIGCKVKSIRNTT 315

Query: 332 TKRIPGRPLCECS 370
             R+PGR +C CS
Sbjct: 316 HPRVPGRMVCICS 328


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 9   KKTKEFSVNFNPKRQHTVSRRIFAMGRDFDPVVDLAEN 122
           +K  +FS+ F+P R  +V   I    RDF   + +A N
Sbjct: 772 RKRSQFSIIFSPVRMRSVLEVIPKQSRDFGDYICMARN 809


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 149 TSLRPDSMSSLINPIKPEQPLKAMNDEIG 235
           TS+ PDS +       P+QPLK M + IG
Sbjct: 720 TSINPDSPALQAKLQPPQQPLKGMEEVIG 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,316,448
Number of Sequences: 59808
Number of extensions: 310744
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)