Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095646-1|BAC04596.1|  844|Homo sapiens protein ( Homo sapiens ...    30   5.3  
BC066945-1|AAH66945.1|  582|Homo sapiens LARP7 protein protein.        29   9.3  

>AK095646-1|BAC04596.1|  844|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38327 fis, clone FCBBF3025073. ).
          Length = 844

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +2

Query: 149 TSLRPDSMSSLINPIKPEQPLKAMNDEIG-EKKRGKNSKQYLALEPKSKVNECAFRCSKV 325
           T L      +LI+  K EQ L ++  E+  EKK  ++ +Q    E +  +      C   
Sbjct: 680 TILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQ 739

Query: 326 SLTKRIPGRPLCECSRRHQIQILQCTKKKKILFSLFYQ 439
              +R+  + L E   R Q+Q+     K KIL   F Q
Sbjct: 740 VELERLKIKQLEEDKHRLQLQLNDAENKYKILEKEFQQ 777


>BC066945-1|AAH66945.1|  582|Homo sapiens LARP7 protein protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 203 QPLKAMNDEIGEKKRGKNSKQYLALEPKSKVNECAFRCSKVSLTKRIPGRPLCECSRRHQ 382
           +P+ A+   + EKK+ K  K  +  E   +  E     S  S++K    RP  E S    
Sbjct: 207 KPIPALR-VVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIES 265

Query: 383 IQ-ILQCTKKKK 415
            +   QC+KKKK
Sbjct: 266 TEPQKQCSKKKK 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,015,640
Number of Sequences: 237096
Number of extensions: 1401252
Number of successful extensions: 2761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)