Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0546
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-6|CAA19451.1| 371|Caenorhabditis elegans Hypothetical ... 32 0.27
Z78410-10|CAB01640.2| 337|Caenorhabditis elegans Hypothetical p... 28 4.3
Z68227-2|CAA92509.1| 322|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z74041-1|CAA98520.1| 255|Caenorhabditis elegans Hypothetical pr... 27 7.5
U80450-2|AAK77614.1| 252|Caenorhabditis elegans Hypothetical pr... 27 7.5
U80450-1|AAK77613.1| 244|Caenorhabditis elegans Hypothetical pr... 27 7.5
U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical pr... 27 10.0
U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 27 10.0
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 27 10.0
AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine re... 27 10.0
>AL023828-6|CAA19451.1| 371|Caenorhabditis elegans Hypothetical
protein Y17G7B.4 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 210 RGCSGFIGLISELMESGLREVAKMCSKKS 124
R C+ F+G S L+ SGLREV + C +++
Sbjct: 102 RSCTIFLGYTSNLVTSGLREVLRYCVQRN 130
>Z78410-10|CAB01640.2| 337|Caenorhabditis elegans Hypothetical
protein C51E3.3 protein.
Length = 337
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = -2
Query: 416 FFFFWCIVISVFGVFVS-----THKEVVQVCVLLMILCCSEKRIH 297
FFFF+C VI + G FV K C +L+ + C IH
Sbjct: 14 FFFFFCSVIGIAGNFVMLLCSFRTKRFRSPCYILITVTCVADAIH 58
>Z68227-2|CAA92509.1| 322|Caenorhabditis elegans Hypothetical
protein F49C12.4 protein.
Length = 322
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 505 QNGVEEAFVQYRSEKLYNNKTVL 437
QNG++EAFV ++E Y KTV+
Sbjct: 184 QNGMQEAFVLGKNEGDYRTKTVM 206
>Z74041-1|CAA98520.1| 255|Caenorhabditis elegans Hypothetical
protein T03F7.5 protein.
Length = 255
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 381 KYRYYNAPKKKKFFLVYFIKTVLLLYNFSE 470
K+ N K FF++ + +L LYNF E
Sbjct: 143 KHNVSNVLNKNNFFMILILVLILQLYNFYE 172
>U80450-2|AAK77614.1| 252|Caenorhabditis elegans Hypothetical
protein M01E11.4b protein.
Length = 252
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 386 VFGVFVSTHKEVVQVCVLLMILCCSEKRIH 297
V G FV +HKEVV+VC +L S H
Sbjct: 127 VCGWFVGSHKEVVEVCGGFRVLSRSRFNPH 156
>U80450-1|AAK77613.1| 244|Caenorhabditis elegans Hypothetical
protein M01E11.4a protein.
Length = 244
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 386 VFGVFVSTHKEVVQVCVLLMILCCSEKRIH 297
V G FV +HKEVV+VC +L S H
Sbjct: 119 VCGWFVGSHKEVVEVCGGFRVLSRSRFNPH 148
>U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical
protein C35B8.3a protein.
Length = 470
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 152 RWRRCALKRAVFR*IYHRIEIATHCEDPARNCVLSLRVEIHA 27
RW + A+ + +Y THC D RN V L + I A
Sbjct: 414 RWEQAFTPEALIQCVYR----LTHCSDDVRNLVSGLSIVISA 451
>U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical
protein C35B8.3b protein.
Length = 485
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 152 RWRRCALKRAVFR*IYHRIEIATHCEDPARNCVLSLRVEIHA 27
RW + A+ + +Y THC D RN V L + I A
Sbjct: 429 RWEQAFTPEALIQCVYR----LTHCSDDVRNLVSGLSIVISA 466
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 97 SKSRPIAKIRRETVCCLFGLKFTLNSLVFFI 5
S S K R+E CL L F LNS+VF +
Sbjct: 14 SSSHKQRKPRQEISACLKWLVFLLNSIVFLV 44
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 97 SKSRPIAKIRRETVCCLFGLKFTLNSLVFFI 5
S S K R+E CL L F LNS+VF +
Sbjct: 38 SSSHKQRKPRQEISACLKWLVFLLNSIVFLV 68
>AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine
receptor, class x protein104 protein.
Length = 279
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 290 LTLVRELGIVLNFYLFFFLL 231
+ LV GI++NFY+F+F L
Sbjct: 15 MLLVSFCGILINFYMFYFFL 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,322,512
Number of Sequences: 27780
Number of extensions: 241549
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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