Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.8  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 384 IWCLREHSQRGRPGMRFVNDTLLQRKAH 301
           IW  +E+   G     F N  + Q K H
Sbjct: 150 IWPFKEYQMNGNNITNFKNSNIFQLKQH 177


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 393 YNAPKKKKFFLVYFIKTVLLLYNFSERYWTNASST 497
           Y+ PK+ +  L YF+   L+   F ER   +   T
Sbjct: 250 YHMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGKT 284


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 393 YNAPKKKKFFLVYFIKTVLLLYNFSERYWTNASST 497
           Y+ PK+ +  L YF+   L+   F ER   +   T
Sbjct: 250 YHMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGKT 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,652
Number of Sequences: 438
Number of extensions: 2872
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)