Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0546
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    31   0.76 
At4g02900.1 68417.m00392 early-responsive to dehydration protein...    27   7.1  
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    27   7.1  

>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 556 IPRVLMINWVPHMWILIQNGVEEAFVQY 473
           I R L I++ PH+WI + +G+E  F+ Y
Sbjct: 244 IMRKLAISFDPHIWINVHSGMEALFMPY 271


>At4g02900.1 68417.m00392 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 785

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 131 LEHIFATSLRPDSMSSLINPIKPEQPLKAMNDEI 232
           L H+ A S RPD ++ L+  + P+ P +++N+ +
Sbjct: 186 LRHLAAESRRPDQLTVLVRNVPPD-PDESVNEHV 218


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 158 RPDSMSSLINPIKPEQ--PLKAMNDEIGEKKRGKNSKQYLALEPKSKVNE 301
           R  S+ +L+  +  ++  P +A  + I  ++RG+N K     +PK +++E
Sbjct: 181 RYGSLGNLVESVASQRAAPSRAHLNAINNRRRGENEKNDSEKKPKERISE 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,368,522
Number of Sequences: 28952
Number of extensions: 212753
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)