Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0545
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   0.49 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.86 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   8.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   8.0  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 273 RPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQ 139
           RP  T +      ++ R+   P     +++PP P+R +   V  Q
Sbjct: 456 RPPSTELGTNIYTSSKRQRTSPQLSPMSSLPPYPNRTQITEVTQQ 500


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 225  RETAPPHTGAGAAVPPGPH 169
            RE APP   +   VPP  H
Sbjct: 1792 REEAPPSVHSSTVVPPPQH 1810


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 309 WRRACCPTCCASRPSRTRVAHRP 241
           WR      C   RP +T   HRP
Sbjct: 514 WRETGEAACDPYRPWQTVYNHRP 536


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 234 AASRETAPPHTGAGAAVPPGPHRARA 157
           A ++E   P     AAVP GP   +A
Sbjct: 235 AEAQEIKKPALLLSAAVPVGPDNIKA 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,967
Number of Sequences: 336
Number of extensions: 982
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)