Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0545
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.84
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 4.5
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 7.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 7.8
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 24 7.8
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 0.84
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = -3
Query: 291 PTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPP---GPHRARAAGVAVQESVVAS 121
P + S +A P P ET P T +G VPP H VA Q V A+
Sbjct: 911 PPTASMTASAPAIASPPPPKVG-ETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAA 969
Query: 120 TRTSHRNN 97
+R S N
Sbjct: 970 SRISSSPN 977
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 243 PVPAASRETAP---PHTGAGAAVPPGPHRARAAGVAVQESVVA 124
P PAA+ T P P A AAVP P A E VVA
Sbjct: 372 PQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEHVVA 414
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.5
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -3
Query: 243 PVPAASRETAPPHTGAGAAVPPGPHRARAAGVA 145
P+PA APP A A PP P A AA VA
Sbjct: 458 PLPAGM-PAAPPLPPAAPAPPPAPAPAPAAPVA 489
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -3
Query: 231 ASRETAPPHTGAGAAVP-PGPHRARAAGVAVQESVVASTRTSHRNNTY 91
A T PP + A VP P P + A S A HR++ Y
Sbjct: 1514 APSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRSSPY 1561
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 4.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 246 RPVPAASRETAPPHTGAGAAVP 181
+ +P + ET+PPH A ++ P
Sbjct: 577 KEIPVTASETSPPHAPAVSSTP 598
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 5.9
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -3
Query: 288 TCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVVASTRTS 109
T C + S + P T PP + + + PP P + G + S + ST TS
Sbjct: 283 TSCTTSTSIPPTGNSTTPVTP--TVPPTSTSSTSTPPPPASTSSTGTS--SSPLPSTSTS 338
Query: 108 HRNNT 94
+T
Sbjct: 339 CTTST 343
Score = 24.6 bits (51), Expect = 5.9
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -3
Query: 288 TCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVVASTRTS 109
T C + S + P T PP + + + PP P + G + S + ST TS
Sbjct: 337 TSCTTSTSIPPTGNSTTPVTP--TVPPTSTSSTSTPPPPASTSSTGTS--SSPLLSTSTS 392
Query: 108 HRNNT 94
+T
Sbjct: 393 CTTST 397
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 240 VPAASRETAPPHTGAGAAVPPGPHRAR 160
VP +S APP + A +PP + +
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRK 1961
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 7.8
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 243 PVPAASRETAPPHTGAGAAVPPGP-HRARAAGVAVQESVVASTRT 112
PVP S TAPP A +PP P A+A V S S T
Sbjct: 1209 PVPPPS--TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVST 1251
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 138 ESVVASTRTSHRNNTYQS*NFNTYDSLEN 52
ES+++++R S ++T +S NF +S N
Sbjct: 295 ESIISTSRKSSYSSTTESSNFENLESPRN 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,450
Number of Sequences: 5004
Number of extensions: 14850
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -