Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0545
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  31   0.27 
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   0.27 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)                  29   1.1  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                29   1.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     29   1.9  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 29   1.9  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               28   3.3  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   4.4  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   27   7.7  
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 201 GAGAAVPPGPHRARAAGVAVQESVVASTRTSHRNNT 94
           G   +VP  PH A A GV++  +   S RTS  NNT
Sbjct: 235 GGRLSVPGAPHEAMANGVSISNT---SVRTSENNNT 267


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -3

Query: 300 ACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRAR-AAGVAVQESVVA 124
           +C PTCC   PS  ++A   VPA      PP T      PP P   +  A   ++   + 
Sbjct: 188 SCQPTCCGMNPS--QLAQSVVPAPQYVHVPPATPT-PKPPPTPKTPKPGAAPKIKNGCLP 244

Query: 123 STRTSHRNNTYQS 85
              TS    +Y S
Sbjct: 245 PCTTSVMGASYSS 257


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = -3

Query: 321  PPRCWRRACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAV 142
            PPR  RR   P+    R  R   ++ P P  S    PP     A+ PP P RAR    + 
Sbjct: 918  PPR--RRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKR-ASTPPSPRRARRKVASP 974

Query: 141  QE 136
            +E
Sbjct: 975  EE 976


>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
          Length = 286

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 291 PTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPP 178
           PT  A+ P  T  A  P   A+   APP   A AA PP
Sbjct: 145 PTTAATTP--TTAATTPAAGAAAAAAPPPAAAAAAPPP 180


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
 Frame = -3

Query: 339 RARVRLPPRCWRRACCPTCCASRPSRTRVAHRPVPAASRETAP-PHTGAGAAVPPGPHRA 163
           RA    P      +   TC  S P          P  SR + P    G+    PP P  +
Sbjct: 530 RAAAGTPAGSSNSSSSSTCSLSSPGMRSSVGSITPPPSRTSTPRSRAGSRTRTPPTPTSS 589

Query: 162 RAAGVAVQESVVASTRTSHRNNTYQS 85
           RA+          +T+T+ + +T +S
Sbjct: 590 RASSRGSAGGGAKTTKTTKKCSTRKS 615


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 264  RTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVVASTRTSHRNNT 94
            RT  A    PA+   T  P T AGAA    P  A A+  A   +   + +TS    T
Sbjct: 6342 RTTKAPTTKPASKTTTTRPGTKAGAAATAKPPTAAASAAAKIPAKTTAKKTSTTTTT 6398


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = -3

Query: 288 TCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQE 136
           T    RP  T   H           PPH      VP GPH  +    A+Q+
Sbjct: 378 TQAQGRPENTATPH--TTRGQSPLLPPHMTGMHGVPDGPHPIQGMATAIQQ 426


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/42 (45%), Positives = 19/42 (45%)
 Frame = -3

Query: 279 ASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAA 154
           AS PS TR    PV   S     PH   G A  PG  R RAA
Sbjct: 712 ASSPSGTR---GPVSGPSGARGSPHQPRGRASSPGGARGRAA 750


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 240 VPAASRETAPPHTGAGAAVPPGPHR 166
           +P AS+ TAP  TGA  A  P P++
Sbjct: 339 IPQASQGTAPTTTGASGASSPAPNQ 363


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -3

Query: 327 RLPPRCWRRACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPH--RARAA 154
           R PP   + AC  T   S  +R+    RP PAA   T+         VPP P     RAA
Sbjct: 116 RSPPTSPKTACL-TRGPSEDNRSSPPRRPPPAAPHRTSSLSRKIKPPVPPKPKVMPDRAA 174

Query: 153 GVAVQESVVASTRTSH 106
            ++ Q + ++     H
Sbjct: 175 SLSRQSASLSRRIPEH 190


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -3

Query: 261 TRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVV-ASTRTSHRNNTYQS 85
           T   H  +P AS  T  PH    +     PH   A+       +  AST T+H +  + S
Sbjct: 113 TPTTHPHIPHASTPTTHPHITHASTPTTHPHITHASTPTTHPHITHASTPTTHPHIAHAS 172


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 243 PVPAASRETAPPHTGAGAAVPPGPHRARAA 154
           P P A+   APP   A  A PP P    AA
Sbjct: 55  PSPPAAAPAAPPPPAAAPAAPPPPAAPPAA 84


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 300 ACCPTC-CASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGP 172
           ACC T  C ++P++      P PA +    PP T A  A    P
Sbjct: 85  ACCNTDNCNAKPAQPDTDVPPPPATTSAPPPPTTTAPPATTSPP 128


>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = -3

Query: 324 LPPRCWRRACCPTCCASRPSRTRVAHRPVPAASRET-APPHTGAGAAVPPGPHRARAAGV 148
           +P  C    C PT C        +    +P        PP     A+ PP P   +  G 
Sbjct: 380 VPTLCKHTICVPTLCEHTACLPTLCEHTIPVCPPSARTPPVCPPSASTPPVPDVPKWGGC 439

Query: 147 AV 142
            V
Sbjct: 440 IV 441


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 246 RPVPAASRETAPPHTGAGAAVPPGPHRARA 157
           +P P  SR  APP    GA  PP P R  A
Sbjct: 286 QPPPPPSRGAAPPPPSRGAP-PPPPSRGSA 314



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 291 PTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGP 172
           P+  A+ P  +R A  P P+      PP    G A PP P
Sbjct: 291 PSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPP 330


>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 227 HVRRRHLIQELAQQFRQDLTEPELLES 147
           H+RRR+L+++  +  +  + +PE+L+S
Sbjct: 285 HIRRRNLMEDSYRAVQLSIVKPEILKS 311


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 246 RPVPAASRETAPPHTGAGAAVPPGP 172
           +P P A +   PP  GAG   PP P
Sbjct: 558 QPPPGAGQGGGPPPPGAGQGGPPPP 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,236
Number of Sequences: 59808
Number of extensions: 137578
Number of successful extensions: 789
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)