Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0545
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    27   0.061
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    27   0.081
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.43 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.75 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   1.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   9.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   9.3  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 0.061
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 123 STRTSHRNNTYQS*NFNTYDSL 58
           S +T H NN Y + N+N Y  L
Sbjct: 86  SNKTIHNNNNYNNNNYNNYKKL 107


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 0.081
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 123 STRTSHRNNTYQS*NFNTYDSLEN 52
           S +T H NN Y + N+N Y+   N
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYNNN 109


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 123 STRTSHRNNTYQS*NF-NTYDSLEN 52
           S +T H NN Y + N+ N Y++  N
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNYNN 343


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
 Frame = -3

Query: 288 TCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARA--AGVAVQESVVASTR 115
           TC     S T   H   P+    ++ P   A  A    PHR RA     +  +  +    
Sbjct: 499 TCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRAS 558

Query: 114 TSHRNNTYQS*NFNTYDSLENTGIDA 37
            S      Q   F   DS  ++GI++
Sbjct: 559 LSKTPQPPQCPRFRKLDSPSDSGIES 584


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 123 STRTSHRNNTYQS*NFNTYDSLEN 52
           S +T H NN Y++ N   Y ++ N
Sbjct: 319 SNKTIHNNNNYKNYNKKLYYNIIN 342


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 123 STRTSHRNNTYQ-S*NFNTYDS 61
           S RT H NN Y+ + N N Y++
Sbjct: 86  SNRTIHNNNNYKYNYNNNNYNN 107


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKK 264


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 117 RTSHRNNTYQS*NFNTYDSLENTGIDACFREFFIKKKKK 1
           RTS  ++ Y+       +S  N G  +C R+   + KKK
Sbjct: 226 RTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKK 264


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENTGIDACFREFFIK 13
           S  +N Y+  N+N Y++  N   +   ++ + K
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYK 348


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 261 TRVAHRPVPAASRETAPPHTGAGAAVPPGP 172
           T +AH   PAA +    PH        PGP
Sbjct: 446 TPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = -3

Query: 312 CW----RRACCPTCCASRPSRTRVAHRP 241
           CW    RRA     CA  P R R  ++P
Sbjct: 392 CWSRDFRRAFVRILCACCPGRVRRRYQP 419


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 111 SHRNNTYQS*NFNTYDSLENT 49
           S  +N Y+  N+N Y++  NT
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 123 STRTSHRNNTYQS*NFNTYDSLEN 52
           S +T H NN Y+  N+N   +  N
Sbjct: 86  SNKTIHNNNNYKY-NYNNKYNYNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,046
Number of Sequences: 438
Number of extensions: 1249
Number of successful extensions: 24
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)