Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0545
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47660.1 68414.m05295 hypothetical protein 32 0.13
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 32 0.17
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 31 0.39
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 30 0.51
At2g09970.1 68415.m01036 hypothetical protein 30 0.51
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 30 0.68
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 28 2.1
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 2.7
At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family... 27 3.6
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 27 3.6
At1g72510.2 68414.m08385 expressed protein 27 4.8
At1g72510.1 68414.m08384 expressed protein 27 4.8
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 27 4.8
At4g20850.1 68417.m03025 subtilase family protein contains simil... 27 6.3
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa... 27 6.3
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 27 6.3
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 26 8.3
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = -3
Query: 276 SRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVVASTRTSHRNN 97
+RP+ A P T PP GA AVP H A A V TS R N
Sbjct: 32 ARPTTPPPARPTTPPPVWPTTPPPAGAPVAVPAAAHVAVPAAAPVAAPAELGETTSRRTN 91
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 31.9 bits (69), Expect = 0.17
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 243 PVPAASRETAPPHTGAGAAVPPGPHRARAAGVA--VQESVVASTRTSHRNNTYQS*NFNT 70
P P+ P AGA PP P A A+ + +Q SVV +T + N++ S +T
Sbjct: 530 PTPSPPHPVRPQLAQAGAPPPPPPLPAAASKPSEQLQHSVVQATEPLSQGNSWMSLAGST 589
Query: 69 YDSLEN 52
+ ++ N
Sbjct: 590 FQTVPN 595
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -3
Query: 348 QRARARVRLPPRCWRRACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPH 169
+R+++R R PPR +RR+ P+ R R P P + PP G + P P+
Sbjct: 123 RRSKSRSRTPPR-YRRS--PSY-GRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPY 178
Query: 168 RAR 160
RAR
Sbjct: 179 RAR 181
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 30.3 bits (65), Expect = 0.51
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -3
Query: 291 PTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVV 127
PT +S P P S P GAG+ PP P +A A V V+
Sbjct: 135 PTPPSSTPGTPTTPESPPSGGSPTPTTPTPGAGSTSPPPPPKASGASKGVMSYVL 189
>At2g09970.1 68415.m01036 hypothetical protein
Length = 166
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 233 PPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP 132
PP RHLI + Q R+ L P +L S+ SP
Sbjct: 106 PPSNLTRHLISAMRQILRKSLDSPRMLRSMPNSP 139
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 29.9 bits (64), Expect = 0.68
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -3
Query: 321 PPRCWRRACCPTCCASRPSRTRVAHRPVPAASR---ETAPPHTGAGAAVPPGP 172
PP R ACC + P R P+P R + PP + +G A PP P
Sbjct: 602 PPSRPRYACCRIPAVNPPPRLVCGPYPLPRLVRVGSPSPPPPSMSGGAPPPPP 654
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 324 LPPRCWRR-ACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHR 166
L P C + CPT C+ PS +P P+ S +P + + PP PH+
Sbjct: 27 LTPLCISECSTCPTICSPPPS------KPSPSMSPPPSPSLPLSSSPPPPPPHK 74
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 270 PSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVA 145
P ++PV ++ A P G PPGP A A +A
Sbjct: 210 PLAPSAVNQPVTTLTKPAAYPSLGPHVPFPPGPAAANAGALA 251
>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
protein
Length = 161
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 297 CCPTCCASRPSRTRVAHRPVPAASRETAP--PHTGAGAAVPPGPHRARAAGVAVQESV 130
CC T C S P+ TR H+ P + P H+ +G+ PP R + +A Q +
Sbjct: 24 CCITDCFSEPA-TR-PHKSPPQTIQTPTPARSHSQSGSQQPPLIRRKQQQPLACQHQI 79
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 270 PSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAG 151
P R + P P +APP G + PP PH + G
Sbjct: 243 PQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYG 282
>At1g72510.2 68414.m08385 expressed protein
Length = 165
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 233 PPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP 132
PP HLI + Q R+ L P +L S+ SP
Sbjct: 105 PPPNPTGHLISAMRQILRKSLDSPRMLRSMPNSP 138
>At1g72510.1 68414.m08384 expressed protein
Length = 165
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 233 PPHVRRRHLIQELAQQFRQDLTEPELLESLFKSP 132
PP HLI + Q R+ L P +L S+ SP
Sbjct: 105 PPPNPTGHLISAMRQILRKSLDSPRMLRSMPNSP 138
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.1 bits (57), Expect = 4.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 291 PTCCASRPSRTR--VAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAGVAVQESVVAST 118
P A+ P + R V+ PVP A+ + P + A VP PH A A Q + S
Sbjct: 269 PVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPVPSFPHIPAVARPATQ--AIPSI 326
Query: 117 RTS 109
+TS
Sbjct: 327 QTS 329
>At4g20850.1 68417.m03025 subtilase family protein contains similarity
to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
(Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
sapiens]
Length = 1380
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 107 TVTILTKAKTSILTTAWKTLE*MLVSENSS*KKK 6
T+T+L + + S L TA K L+ ++ +EN + KK
Sbjct: 1311 TLTVLREKRLSRLGTALKVLDDLIQNENETANKK 1344
>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 398 VWWRREKVCVVCACEARSGLV 336
+W+ K C VC CE G++
Sbjct: 133 LWFELHKTCPVCRCELDPGMI 153
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/60 (26%), Positives = 20/60 (33%)
Frame = -3
Query: 330 VRLPPRCWRRACCPTCCASRPSRTRVAHRPVPAASRETAPPHTGAGAAVPPGPHRARAAG 151
+ LPP +AC P C P + PPH G P PH + G
Sbjct: 18 ITLPPTI--QACTP-CTRPHPPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGKGGG 74
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 197 LAQQFRQDLTEPELLESLFKSP 132
L+ Q ++T ELLESLF+SP
Sbjct: 1206 LSPQDSTEITVSELLESLFRSP 1227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,735,490
Number of Sequences: 28952
Number of extensions: 91109
Number of successful extensions: 485
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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