Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0544
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.42 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.42 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   3.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   5.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 415 HSNKSSADLRIRKTQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAAPP 582
           H N+  A  R++K Q+  +++  V+   E  PR  T      + Y + SR   +PP
Sbjct: 88  HRNQCRA-CRLKKCQNVGMNKDAVQ--HERGPRNSTLRRQQMSSYYNESRVMMSPP 140


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 415 HSNKSSADLRIRKTQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAAPP 582
           H N+  A  R++K Q+  +++  V+   E  PR  T      + Y + SR   +PP
Sbjct: 88  HRNQCRA-CRLKKCQNVGMNKDAVQ--HERGPRNSTLRRQQMSSYYNESRVMMSPP 140


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 243 SGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKK 353
           S E    + KH +   APQS E  +H  + +MA+V++
Sbjct: 71  SDEENSFQGKHKSRRKAPQSFEDIQH--QRVMANVRE 105


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 64  RFFSLHNPIQRYFSNKRH 11
           R ++  NP Q+Y+ NK H
Sbjct: 348 RQYNYPNPQQQYYYNKNH 365


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 64  RFFSLHNPIQRYFSNKRH 11
           R ++  NP Q+Y+ NK H
Sbjct: 296 RQYNYPNPQQQYYYNKNH 313


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 222 YFFNLTEEFIHEATFDGNVDIVRPDV 145
           YF  L EE + E+  +  +++++PD+
Sbjct: 415 YFKGLDEEKLPESGENIEINLIKPDI 440


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 506 LYSVITSTNLRERVECWVFLILRSADDL 423
           LY++I        V  W++L+L  ADD+
Sbjct: 44  LYNIILQVLFVSFVSYWLYLVL-EADDM 70


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 506 LYSVITSTNLRERVECWVFLILRSADDL 423
           LY++I        V  W++L+L  ADD+
Sbjct: 62  LYNIILQVLFVSFVSYWLYLVL-EADDM 88


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 565 SRAAPPPTMNLRK 603
           S +A PPT+N++K
Sbjct: 228 STSASPPTVNIKK 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,486
Number of Sequences: 336
Number of extensions: 1949
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)