Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0544
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 33 0.037
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 32 0.065
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.15
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 30 0.34
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 30 0.34
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.46
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 29 0.80
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 28 1.4
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 28 1.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 3.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.2
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 4.2
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 26 4.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.2
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 26 5.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 7.4
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.8
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 33.1 bits (72), Expect = 0.037
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKL--KHI 389
+N+ D ++S ++++ KKK I A + D+KT E E ++A + G+L K+
Sbjct: 126 QNSNDQPEESDDKKKRKKKVKEI-RATRLDDKTVEEYEFILAQIDNYDGDQLGELMKKYD 184
Query: 390 EQNIGTRGALE 422
+N T G LE
Sbjct: 185 IRNPATNGELE 195
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 32.3 bits (70), Expect = 0.065
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 456 PTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEITGRATTDDE 593
P N P ++ G +++ Q +YR R QR +EI T+DE
Sbjct: 515 PFINDNPLIQSGMRHIRNLQDEYRRRRNRTAQRVVEIPNETQTEDE 560
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.15
Identities = 26/104 (25%), Positives = 48/104 (46%)
Frame = +3
Query: 267 KKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTRGALEQIVGRSQD 446
K S I + D +T LED +A ++K K++ Q++ L + R+ +
Sbjct: 1632 KDLSNIKDSLSEDLRTLRSLEDSVASLQKEC-KIKSNTVESLQDV-----LTSVQARNAE 1685
Query: 447 KKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEITGRA 578
+D S+ ++RR DDR + + + S+++ Q E RA
Sbjct: 1686 LEDEVSRSVDKIRRRDDRCEHLSGKLK-KLHSQLEEQHETFFRA 1728
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 445 IRKTQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAAP 579
I K+ H TLS++ VE+ +E P ++A R NS++ A P
Sbjct: 245 IEKSLHDTLSQRTVEIQSEIAKNEPVLDSAMFG--RHNSKNWALP 287
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 522 YRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSARFHFKGLSWRPNR 665
YR + + R++RQLEI T+D+ + + + N + + L R NR
Sbjct: 127 YRAQYEQRMRRQLEIANPRATEDDFQTAINEENGGQVFAQAL-LRSNR 173
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 29.5 bits (63), Expect = 0.46
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 288 SAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTRGALEQIVGRSQDKKDPTFN 467
S+P SD LE ++ AN+ + K+ +E+ GT L+ I D DP ++
Sbjct: 166 SSPSSDPFFDSYLEQAFEKAERLANEQQ-KISKVEKTFGT---LDSIGTEQDDCFDPDYS 221
Query: 468 SLP 476
+LP
Sbjct: 222 NLP 224
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 28.7 bits (61), Expect = 0.80
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 234 RQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKH 386
+Q+S ++ KK+ L+A + +EK EL +M K+ K+ KLK+
Sbjct: 530 KQNSKSAKKTKKRQRDTLTAEEKEEKEAKELSKMMMSNKQ--RKLYSKLKN 578
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 234 RQDSGEREEVKKKHSAI--LSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGT 407
++++ + ++KK H + L + T +ELE+ A NK+ K K + +GT
Sbjct: 60 KEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEETDAGFDSYWNKITAKAKVVSSLLGT 119
Query: 408 R 410
+
Sbjct: 120 K 120
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQ 395
R T+ D +++ +++ +S + + L +++D K N + LK+ +
Sbjct: 701 RQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVFSLNLVISDAMKLTNNIADALKNNKV 760
Query: 396 NIGT-RGALEQIV 431
NIGT + +LE +V
Sbjct: 761 NIGTIKASLEVLV 773
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 228 DDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGK 377
D++ D + + H+ S P +D+K K + +D ++K ++NK K
Sbjct: 66 DNKNDPKKTHNEDESHTNE-SLPSTDKKKKKDNDDFKQNLKSSSNKTEEK 114
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 237 QDSGEREEVKKKHSAILSA-PQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTR 410
+ S RE + H I+S P + ++ K EDL+A V + + + K +QN G R
Sbjct: 339 EPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGNR 397
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 457 QHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAAPPP 585
Q + L +F ++ E P RP T+ + D+S A PPP
Sbjct: 1340 QQAPLENQFSKMSLE-PPVRPAVPTSPKPQIPDSSNVHAPPPP 1381
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 589 MNLRKCSNKATRPVFTSR 642
+ LR+CS+K RP FTS+
Sbjct: 448 LRLRQCSDKTYRPEFTSQ 465
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 240 DSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADV 347
D+G R K+K +L S+EK + E+E+L+ ++
Sbjct: 337 DNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEI 372
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 454 TQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAA 576
+ HST R F ++P+ PTT + +R + + S +A
Sbjct: 137 SNHSTPERTFASDAKNHSPKGPTTTSFSRNETQSSPHSHSA 177
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 436 DLRIRKTQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRA 573
DL + KT H+T+ + + +++ P E+ + A R+++ SRA
Sbjct: 17 DLPVEKTAHNTVVKSEMGALSKAYPTYSLDESFSFAPIRESTVSRA 62
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 306 HLTVALIRWHCAFSSLLHVRLNLVYHLSYFFNLTEEFIHEATFDGNVDI 160
H T++L W S H +L+ VY+ + + + T+DG VD+
Sbjct: 168 HWTISLAEW----SPTGH-QLSFVYNNDLYVRKNDGNVQRLTYDGTVDV 211
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 556 NSRSRAAPPPTMNLRKCSNKATR 624
NSR R +P P + + CS+++ R
Sbjct: 204 NSRYRGSPKPNIEKQSCSSESDR 226
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 427 SSADLRIRKTQHSTLSRKFVEVMTEYNPRRPTTETAARAGYRDNSRSRAAP 579
SSA + + H+ S T YN RP + + Y +SR + +P
Sbjct: 274 SSAGMTHAQPTHNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSSRRKPSP 324
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.8
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQ 395
RN D E+ K+K S + +EK + E M+ V K A+ V +
Sbjct: 1403 RNNDDSSNKINLSEKEKEKESI-----EDEEKNR---EGSMSPVAKHASDVEDDHDVAKS 1454
Query: 396 NIGTRGALEQIVGRSQDKKDPT--FNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEIT 569
RS +KK P+ F S+ Q D + +TD D+ + + +
Sbjct: 1455 TAPDFETSSHRPERSSEKKSPSPVFTSVKQTAENDADNEDDKTDMDDQTEETLDADNTME 1514
Query: 570 GRATTDD 590
+ DD
Sbjct: 1515 EEPSKDD 1521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,080
Number of Sequences: 5004
Number of extensions: 36242
Number of successful extensions: 157
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -