Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0544
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 38 0.007
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 30 1.4
01_01_0012 + 71903-72935,73468-73981,74619-76008 30 1.4
11_06_0289 - 21969248-21973516 29 2.5
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 2.5
07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559 29 3.3
03_05_0634 + 26298638-26298866,26299338-26299452,26299755-262998... 29 3.3
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110... 29 4.4
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 29 4.4
03_01_0476 - 3660327-3661261,3661401-3661668 29 4.4
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 28 7.7
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 28 7.7
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 KKKHSAILSAPQSDEKT-KHELEDLMADVKKTANKVRGKLKHIEQNIGTRGAL 419
+K+HSA + + ++ K EL+ +ADV +T + ++ LK E+N+ TR AL
Sbjct: 1187 EKQHSAAIMSQLAETKQGNEELQKKLADVNRTNDILQDSLKRFEENVTTRDAL 1239
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +3
Query: 255 EEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKH-------IEQNIGTRG 413
E+ + + ++S Q+ E TK L + ++ NK++ KH IE+
Sbjct: 1399 EDATTREALLISEKQTHEATKRTLTETQLRNEELINKIQDSDKHALQLELTIERLQENAS 1458
Query: 414 ALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEITGRATTDDE 593
+E ++ R +++ + T + + + + ++ D D+ +Q ++ G TT D
Sbjct: 1459 TMEALLLREREQSNATMKAHSESQERNSQLLKKFEDV-DKKIGLLQGAIQRLGEQTTKDT 1517
Query: 594 L 596
L
Sbjct: 1518 L 1518
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKL--KHI 389
R ++DD D E+ +H SDE+ K + K K + KL +H+
Sbjct: 546 RRSKDDDDDGYSSEDGLDEHDDFFDDEMSDEEIKPNKKQKAKAKDKGKGKGKDKLPEQHL 605
Query: 390 EQNIGTRGALEQIVGRSQD 446
E TR LE +V +D
Sbjct: 606 EDE-ATREELELLVAADKD 623
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 30.3 bits (65), Expect = 1.4
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Frame = +3
Query: 216 RNTRDDRQDSGERE-EVKKKHSAILSAPQSDEK-TKHELEDLMADVKKTANKVRGKLKHI 389
+N D++DS + E E KK+ S + DEK K +ED DV A+K
Sbjct: 676 KNRNSDKKDSKKSEMEDKKRRSDRGNRGDKDEKYLKDPMEDKKLDVSSVAHKRSSSASED 735
Query: 390 EQ-NIGTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEI 566
E N ++ + ++KD + + + RR D V S +++ R ++Q
Sbjct: 736 EMLNSNSKRSKHDAALECHERKDE--DHIEEDRRDLDSVGS-KSEKRSLGNGDHEKQNHD 792
Query: 567 TGRAT 581
T R T
Sbjct: 793 TNRKT 797
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = +3
Query: 210 G*RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHI 389
G D++ + G+ EE K+ + + K + + E K+ N+VR +
Sbjct: 441 GGEREEDEKDERGDGEEEGKEERRDMEKGGEERKEQQQEEQEKEGRKEEQNEVRKE---- 496
Query: 390 EQNIGTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRD 530
T G EQ+ G ++K+D ++ DD + + D D
Sbjct: 497 -----TEGRKEQVAGEEEEKEDHDADNDEDSNDDDDDEEEEEEDDDD 538
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 342 DVKKTANKVRGKLKHIEQNI----GTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQS 509
+VK+ VR K+K +E I G AL+ + + +KD F +L ++R+ D +
Sbjct: 252 EVKRDRQAVRDKIKVLEDQIHAVDGEIAALQDDLTAATARKDKAFEALNELRKTRDLNNT 311
Query: 510 TQTDYR 527
+ YR
Sbjct: 312 SFHQYR 317
>07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559
Length = 158
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 483 RRGDDRVQSTQTDYRDRCKSRIQRQLEITGR----ATTDDELEEMLEQGNSARFHFKGLS 650
RRG D+ Y C R GR A ++E E++L G+SARF ++ S
Sbjct: 20 RRGMDQRSPKDASYARNCAEANPRARN--GRRWPAAGLEEEREDLLFGGSSARFPWQAFS 77
Query: 651 W 653
W
Sbjct: 78 W 78
>03_05_0634 +
26298638-26298866,26299338-26299452,26299755-26299800,
26299952-26300134
Length = 190
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 RVQSTQTDYRDRCKSRIQRQLEITGRATTDDELEEM-LEQGNSARFHFKGLSW 653
R+ + R K + L GR D M LEQG+ R+H+ G++W
Sbjct: 115 RIPQERVSARGHRKKKSTCLLPCHGRKGKADPSPAMPLEQGDGQRYHYPGVAW 167
>08_02_0603 +
19208177-19210033,19210581-19210618,19210937-19211059,
19211471-19211852
Length = 799
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 538 RAGYRDNSRSRAAPPPTMNLR 600
RAG N+R RA PPP NLR
Sbjct: 751 RAGGLGNARRRAVPPPHPNLR 771
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 520 TTETAARAGYRDNSRSRAAPPPTMNLRKCSNKATRPVFTSR--DYHGDPTG 666
T + R GY + + + PP + R C A + +R GDPTG
Sbjct: 466 TATSQFRVGYLEQTDVFQSTPPALRTRACRLIAAKSTLAARIDSIRGDPTG 516
>03_01_0476 - 3660327-3661261,3661401-3661668
Length = 400
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQ 395
R T D+ E E A A Q+ EKTK + + + A + + K K +
Sbjct: 93 RQTSKKAGDAKEAAEATAS-GASSKAEQAKEKTKEAAKGAAGEATRRAEQAKHKTKEAAE 151
Query: 396 NIGTRGA 416
G RGA
Sbjct: 152 AAGERGA 158
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 324 VHASFFHLTVALIRWHCAFSSLLHVRLNLVYHLSYFFNL-TEEFIHEATFDGNV 166
+ A+FF V + W +L +R +++HL FF + TE+ EA G++
Sbjct: 507 MRATFFITYVMVDGWTGVAGEILRLRALIIFHLKNFFLVKTEKDREEAMDPGSI 560
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 231 DRQDSGEREEVKKKHSAILSAPQSDEKT-KHELEDLMADVKKTANKVRGKLKHIEQNIGT 407
D + G ++ KKK + PQ EK+ H D A+ T K + K + + ++
Sbjct: 476 DEAEPGTEKKKKKKKHKLEEEPQEQEKSVAHANGD--AEENGTPKKKKKKNREVSEDAEP 533
Query: 408 RGALEQIVGRSQDKKDPTFNS 470
+ A E G+ + KK T +S
Sbjct: 534 KTATE---GKKKKKKSKTEDS 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,969
Number of Sequences: 37544
Number of extensions: 238331
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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