Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0544
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to ... 35 0.056
At4g36980.1 68417.m05240 expressed protein 33 0.23
At2g45950.1 68415.m05713 SKP1 family protein similar to glycopro... 32 0.30
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 32 0.39
At4g23780.1 68417.m03420 hypothetical protein 31 0.91
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 31 0.91
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 30 1.6
At5g60030.1 68418.m07527 expressed protein 29 2.8
At3g61570.1 68416.m06896 intracellular protein transport protein... 29 3.7
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 29 3.7
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 29 3.7
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 29 3.7
At3g02810.1 68416.m00273 protein kinase family protein contains ... 29 3.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 3.7
At1g03270.1 68414.m00305 expressed protein contains Pfam profile... 29 3.7
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 28 4.9
At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr... 28 4.9
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 28 6.4
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 27 8.5
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 27 8.5
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 8.5
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 27 8.5
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 27 8.5
>At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to
SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
protein At-Syr1) {Arabidopsis thaliana}
Length = 304
Score = 34.7 bits (76), Expect = 0.056
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Frame = +3
Query: 267 KKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIE-QNIGTRGALEQIVGRSQ 443
++ ++ AP + K +E + +V A ++GKL+ ++ +N+ R G
Sbjct: 63 EESKSVTKAPAM-KAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGV 121
Query: 444 DKKDPTFNSLPQVRRGDDRV-------QSTQTDYRDRCKSRIQRQLEITGRATTDDELEE 602
D+ T +L ++ D++ ++ Q +YRD R+ +TG +D ++E
Sbjct: 122 DRSR-TATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYT---VTGERADEDTIDE 177
Query: 603 MLEQGNSARFHFKGL 647
++E GNS + K +
Sbjct: 178 LIETGNSEQIFQKAI 192
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +3
Query: 297 QSDEKTKHELEDLMADVKKTANKVRGKLKHIE---QNIGTRGALEQIVGRS---QDKKDP 458
+ +EK + EL +KK + K R K+ IE + +R QI+ + ++ P
Sbjct: 236 KEEEKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSP 295
Query: 459 TFNSLPQVRRGDDRVQSTQTDYRDR 533
T+ + P+ RR R +S Y R
Sbjct: 296 TYEAYPRSRRSRSRSRSYSPSYSRR 320
>At2g45950.1 68415.m05713 SKP1 family protein similar to
glycoprotein FP21 SP:P52285 from [Dictyostelium
discoideum]; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 342
Score = 32.3 bits (70), Expect = 0.30
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVR--GKLKHI 389
R+ + + G++++ KKK I+S+ +K H+L V++ + +R L
Sbjct: 211 RDHKAVKMSKGKKKKKKKKDQKIVSSNNIHDKESHDLRSKQQCVEEIGSSMREVPNLLSA 270
Query: 390 EQNIGTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDY-RDRCKSRIQRQLEI 566
E +I T A + D+ DP L R +D Q +++ R K R I
Sbjct: 271 EDDISTPNAGSEDED-IDDEIDPAMRELLD-REVEDFAQRLNSNWVRSLGKERRPVHFSI 328
Query: 567 TGRATT 584
G TT
Sbjct: 329 NGNGTT 334
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 31.9 bits (69), Expect = 0.39
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +3
Query: 216 RNTRDDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQ 395
R +D + ERE K+K +SD +T ++ + D K+ +GK + +
Sbjct: 818 RKDKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKR-----KGKDRDRKH 872
Query: 396 NIGTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQ--TDYRDRCKSRIQRQLEIT 569
++ V +D +D + S + G+DR +S + ++R +RQ + +
Sbjct: 873 RRRHHNNSDEDVSSDRDDRDESKKS--SRKHGNDRKKSRKHANSPESESENRHKRQKKES 930
Query: 570 GRATTDDELEE 602
R + +DELE+
Sbjct: 931 SRRSGNDELED 941
>At4g23780.1 68417.m03420 hypothetical protein
Length = 148
Score = 30.7 bits (66), Expect = 0.91
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +3
Query: 249 EREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTRGALEQI 428
E E + K+H ++ + EK + LEDL+ ++ A + +++ ++ IG R ++++
Sbjct: 38 EHENLVKEHETLIKTLELIEKHEITLEDLVKKKQREALVGKEEIEKFDKEIGERKKMQEM 97
Query: 429 VGR 437
+ +
Sbjct: 98 LDK 100
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
Xenopus laevis, PIR:T30335
Length = 1229
Score = 30.7 bits (66), Expect = 0.91
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Frame = +3
Query: 249 EREEVKKKHSAILSAPQSDEKTK-HELEDLMADVKKT--ANKVRGKLKHIEQNIGTRGAL 419
++ E + K + ++ + DE+ K HE E ++ + K LK E+ + +
Sbjct: 1014 QQSEAELKSNIVMLKIKVDEENKRHEEEGVLCTIDNILRTGKATDLLKSQEEKTKLQSEM 1073
Query: 420 ----EQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEITGRATTD 587
E++ ++ D T SL + + +++ +T+ K+R + ++E+
Sbjct: 1074 KLSREKLASVRKEVDDMTKKSL----KLEKEIKTMETEIEKSSKTRTESEMELENTIQEK 1129
Query: 588 DELEEMLEQGNS 623
++EM EQG S
Sbjct: 1130 QTIQEMEEQGMS 1141
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 29.9 bits (64), Expect = 1.6
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Frame = +3
Query: 228 DDRQDSGEREEVKKK--------HSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLK 383
D Q S E EE+KKK + L P +E+ HE D + + + K K
Sbjct: 5 DMEQHSSENEEIKKKKHKKRARDEAKKLKQPAMEEEPDHEDGDAKENNALIDEEPKKKKK 64
Query: 384 HIEQNIG-TRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQT-DYRDRCKSRIQRQ 557
+ G T ++ V + KK N Q +RGD + + + K + ++Q
Sbjct: 65 KKNKKRGDTDDGEDEAVAEEEPKKKKKKNKKLQ-QRGDTNDEEDEVIAEEEEPKKKKKKQ 123
Query: 558 LEITGRATTDDELEEMLEQ 614
+ T + ++E+E+ E+
Sbjct: 124 RKDTEAKSEEEEVEDKEEE 142
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 228 DDRQDSGEREEVKKK----HSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIE 392
+D Q SGER++ KKK I+S + +K + E++ ++ +K +K + KLK I+
Sbjct: 235 EDEQRSGERKKEKKKKRKSDEEIVSEERKSKKKRKSDEEMGSEERK--SKKKRKLKEID 291
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 DDRQDSGEREEVKKKHSAILSAPQS-DEKTKHELEDLMADVK-KTANK 365
+D Q S +R+E KKK S + DEK K E E A++K K NK
Sbjct: 174 EDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNK 221
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +3
Query: 249 EREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTRGALE-Q 425
ERE+++ ++ + E K ELE + D KT+ ++ ++ + L+ +
Sbjct: 204 EREKLRDFQLSLQEERKRSESFKEELESMRLDKNKTSMEISKMRSELDAKLLEIKHLQMK 263
Query: 426 IVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQRQLEITGRATTDDELEEM 605
+ G+ P L +V + ++ + R ++ ++ ++T D E +
Sbjct: 264 LTGQESHAIGPGMEHLKEVNKALEKENNELKLKRSELEAALEESRKLTNSKVFPDATESL 323
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 28.7 bits (61), Expect = 3.7
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Frame = +3
Query: 252 REEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTR-GALEQI 428
+EE+ + + A + E KH+L D+ A ++R + ++ + A+++
Sbjct: 89 KEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQ 148
Query: 429 VGRSQDKKDPTFNSLPQVRRG--DDRVQSTQTDYRDRCKSRIQRQLE---ITGR-ATTDD 590
G N + +++ + + Q+ Y R ++ RQLE + R +++
Sbjct: 149 HGMDSTALSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSM 208
Query: 591 ELEEMLEQGNSAR 629
E+EE+ E N +R
Sbjct: 209 EVEELKEAMNLSR 221
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 28.7 bits (61), Expect = 3.7
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Frame = +3
Query: 252 REEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTR-GALEQI 428
+EE+ + + A + E KH+L D+ A ++R + ++ + A+++
Sbjct: 89 KEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQ 148
Query: 429 VGRSQDKKDPTFNSLPQVRRG--DDRVQSTQTDYRDRCKSRIQRQLE---ITGR-ATTDD 590
G N + +++ + + Q+ Y R ++ RQLE + R +++
Sbjct: 149 HGMDSTALSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSM 208
Query: 591 ELEEMLEQGNSAR 629
E+EE+ E N +R
Sbjct: 209 EVEELKEAMNLSR 221
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 28.7 bits (61), Expect = 3.7
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Frame = +3
Query: 252 REEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQNIGTR-GALEQI 428
+EE+ + + A + E KH+L D+ A ++R + ++ + A+++
Sbjct: 91 KEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQ 150
Query: 429 VGRSQDKKDPTFNSLPQVRRG--DDRVQSTQTDYRDRCKSRIQRQLE---ITGR-ATTDD 590
G N + +++ + + Q+ Y R ++ RQLE + R +++
Sbjct: 151 HGMDSTALSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSM 210
Query: 591 ELEEMLEQGNSAR 629
E+EE+ E N +R
Sbjct: 211 EVEELKEAMNLSR 223
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 28.7 bits (61), Expect = 3.7
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Frame = +3
Query: 210 G*RNTRDDRQDSGEREEVKKKH----SAILSAPQSDEKTKHELED--LMADVKKTANKVR 371
G ++ + ++S + E KKKH S++ S +SD ++HE + D K A ++
Sbjct: 395 GEESSLESEKESVSKNEYKKKHEEEDSSMESDDESDSNSEHEKDQPPKPIDEKNQAQSLK 454
Query: 372 GKLKHIEQNIGTRGALEQIVGRSQDKKDPTFNSLPQVRRGDDRVQSTQTDYRDRCKSRIQ 551
K ++ ++I E++ +S K + S D + + + + + +
Sbjct: 455 IKYRYSWEDIDVND--ERLSSKSSQKSNDESTSSRYDSDRDQDEKGKEEEEEEEAEEKHT 512
Query: 552 RQLEITGRATTDDE 593
I T DD+
Sbjct: 513 HIEHIDSSKTDDDQ 526
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 430 SADLRIRKTQHSTLSRKFVEVMTEYNPRRPTTETA-ARAGYRDNSRSRAAPPPTMNLRKC 606
+AD + + L R+ V E N ++PT A R G R R R P R
Sbjct: 90 AADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSP 149
Query: 607 SNKATRPVFTSRDYHGDP 660
+ R S DY+ P
Sbjct: 150 PPRRGRSRSRSGDYYSPP 167
>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 499
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 252 REEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGKLKHIEQN 398
+E +K S+ L+AP KHE D++ D+ K V+ + ++ +QN
Sbjct: 347 KENMKFYQSSNLTAPL----LKHESHDVVVDIDKVPKHVKNRGRNFQQN 391
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +3
Query: 228 DDRQDSGEREEVKKKHSAILSAPQSDEKTKHELEDLMADVKKTANKVRGK 377
D++++S + +E +K+ S E++ + ED D+KK+ + +GK
Sbjct: 255 DEKEESMDDKEDEKEESNDDDKEDEKEESNDDKEDKKEDIKKSNKRGKGK 304
>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
protein contains Pfam domains PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain and
PF01453: Lectin (probable mannose binding)
Length = 828
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 270 FSSLLHVRLNLVYHLSYFFNLTEEF 196
F S+ +RLN +Y+ S+F N T+ +
Sbjct: 221 FDSVPEMRLNYIYNFSFFSNTTDSY 245
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 306 EKTKHELEDLMADVKKTANKVRGKLKHIEQNI-GTRGALEQIVGRSQDK 449
E TK EL+ + + K+ ++ L+ ++ + G R ALEQ VGR Q++
Sbjct: 588 ESTKLELQSRITEEVKSNAVLQASLERRKKALYGRRQALEQDVGRLQEQ 636
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 321 ELEDLMADVKKTANKVRGKLKHIEQ 395
ELE+ + ++K +++RGK+K++EQ
Sbjct: 211 ELENTIKPIEKEISELRGKIKNMEQ 235
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 321 ELEDLMADVKKTANKVRGKLKHIEQNIGTRGALEQIVGRSQDKK 452
E+ + A + T N +G ++ N+G +G ++ +VG S D K
Sbjct: 11 EVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIK 54
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 303 LTVALIRWHCAFSSLLHVRLNLVYHLSYFFNLT 205
L A+ WH +FSSL+ + + ++ + +F LT
Sbjct: 580 LESAVSSWHSSFSSLIKFQRDFIHSVHAWFKLT 612
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 321 ELEDLMADVKKTANKVRGKLKHIEQNIGTRGALEQIVGRSQDKK 452
E+ + A + T N +G ++ N+G +G ++ +VG S D K
Sbjct: 11 EVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIK 54
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 327 EDLMADVKKTANKVRGKLKHIEQNIG---TRGALEQIVGRSQDKKDPTFNSL 473
ED++ V NK+ ++IE NIG ALE+ G S+ +NSL
Sbjct: 803 EDVLPAVYLCTNKIAADHENIELNIGGSLISSALEEACGISRSTVRDMYNSL 854
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,131
Number of Sequences: 28952
Number of extensions: 193241
Number of successful extensions: 942
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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