Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0543
         (628 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56BF9 Cluster: PREDICTED: similar to Zinc finge...    33   4.2  
UniRef50_UPI0000F2B9B9 Cluster: PREDICTED: similar to tMDC III; ...    33   5.6  
UniRef50_Q4QD29 Cluster: Putative uncharacterized protein; n=6; ...    33   5.6  
UniRef50_Q8XIU9 Cluster: DNA repair protein recO; n=6; Clostridi...    33   7.4  
UniRef50_Q035D4 Cluster: Predicted acyltransferase; n=1; Lactoba...    32   9.8  

>UniRef50_UPI0000D56BF9 Cluster: PREDICTED: similar to Zinc finger
           protein 6; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to Zinc finger protein 6 - Tribolium castaneum
          Length = 264

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 420 HCTYSTRGERDGLKSHFEYTHT 485
           HCTY TR  R  LK+H +YTHT
Sbjct: 26  HCTYKTRA-RKYLKNHIKYTHT 46


>UniRef50_UPI0000F2B9B9 Cluster: PREDICTED: similar to tMDC III;
           n=1; Monodelphis domestica|Rep: PREDICTED: similar to
           tMDC III - Monodelphis domestica
          Length = 660

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 554 KIGGECDARCVCRRASFDCVPVVCVSVLEM*F*SVAFAASGVCA 423
           K+  ECD    C   S +CVP   V   E    + AF  +G+CA
Sbjct: 503 KVNEECDFNDFCNGTSHECVPDTFVRNGEKCHKNTAFCVNGICA 546


>UniRef50_Q4QD29 Cluster: Putative uncharacterized protein; n=6;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 908

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 384  TSQRYHHIQTNLHCTYSTRGERDGLKSHFE-YTHTHNWYTIERRAATHTARITLAPNLTL 560
            T Q+Y HI T ++  Y  +      KSH +   H    +  ER A  HT R  L    TL
Sbjct: 823  TVQQYCHIHTLMNDAYVRKKVGSTFKSHLQSIEHGFLRFRQERLADMHTVRRELNMTTTL 882

Query: 561  NAELSYVR 584
            NA+    R
Sbjct: 883  NAKQQNTR 890


>UniRef50_Q8XIU9 Cluster: DNA repair protein recO; n=6;
           Clostridium|Rep: DNA repair protein recO - Clostridium
           perfringens
          Length = 246

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 376 LCSLIEIQINSS--SYLQLVAIMVCIYCVNFNSNSIEYIIRSVTFKLLYFEVKHIRSKHC 203
           LC LI+I +     ++      + C+Y +N  + S E +IR+   KLL +    +R  +C
Sbjct: 95  LCELIDISLQDEEENFNLYKEFITCLYLINTEAISYELLIRAFELKLLKYTGYGLRFDNC 154


>UniRef50_Q035D4 Cluster: Predicted acyltransferase; n=1;
           Lactobacillus casei ATCC 334|Rep: Predicted
           acyltransferase - Lactobacillus casei (strain ATCC 334)
          Length = 410

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 367 RNIKHPHLNDITIFRLIYIAHTPLAANATD*NHISSTLTHTTGTQSNDARRHTQR 531
           + +KHP+L +I + RLI+IA   L    T   H +S+   +TG  +     H  R
Sbjct: 13  KKVKHPYLYEIDLMRLIFIAGVLLNHTTTAFQHQTSSGLISTGFLATHLMIHFTR 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,249,154
Number of Sequences: 1657284
Number of extensions: 10722747
Number of successful extensions: 26490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26398
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)