Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0543
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.032
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.17 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.1  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 0.032
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 200 CTMLRANMFYFKIQ*LKSNTSYNVLDGIRIKIYTIDTYHYSYKL*IT*RVYLYF--D*GT 373
           CT+   ++   K +   ++    +LD +  K Y +   +Y Y + IT  V+L F    G 
Sbjct: 19  CTVSNVSLHSLKNKRSGASLQVGILDSLVFKCYNLRRIYYFYCVSITFNVHLLFLLCSGY 78

Query: 374 *NIHISTISPYSD*FTLHIL 433
             +H+    P+   FT+H L
Sbjct: 79  FTVHLLFYCPFII-FTVHFL 97



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 108 FSFVLCCTSKIFLYCVYY 55
           ++F++     +FL C+YY
Sbjct: 118 YAFIIFTVHLLFLLCIYY 135



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 108 FSFVLCCTSKIFLYCVYYVW 49
           ++F+L     + L C+YY +
Sbjct: 243 YAFILFTVHLLLLVCIYYFY 262



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 105 SFVLCCTSKIFLYCVYYVW 49
           +F++     +FL C+YY +
Sbjct: 271 AFIIFTMHLLFLLCIYYFY 289


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 168 IIRFLNLVSMLQNDS*ST*QFSFVLCCTSKIFLYCVY 58
           +++ L ++  LQ+D+  +   S  L CT KIFL+ +Y
Sbjct: 53  VVKILWVIYWLQDDALKSVYAS--LLCTEKIFLFAIY 87


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 221 YSLEALYIKTQRVDKFILLLDFSIWLVCY 135
           YS + +Y +      F L+ D+S+W  C+
Sbjct: 216 YSGDEMYFRVAFPSVFTLI-DYSLWKACF 243


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -1

Query: 388 DVDVLCSLIEIQINSSSYLQLVAIMVCIYCVNFNSNSIEYIIRSVTFKLLYF 233
           D + LC L  +     SY+ L + +   Y + F      Y+ ++ T + +Y+
Sbjct: 270 DYNRLCHLCFLLDEKLSYIILTSFLNNFYFIIFQVFESFYLHKATTLETVYY 321


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 498 CTSCVCECTRNVILIRRVRREWSMC 424
           CT C C+     I  +R+  E   C
Sbjct: 774 CTVCTCDAKYLEIKCKRIYNEKQCC 798


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,143
Number of Sequences: 336
Number of extensions: 3166
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)