Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0543
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.14 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   3.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   5.1  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   6.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 390 QRYHHIQTNLHCTYSTRGERDGLKSHFEYTHTHNWYTIERRAATHTARITLAPNLTLNAE 569
           +R HHI+ NL C         G  +H+  T   N Y I+R  A   AR T AP+L L  +
Sbjct: 126 ERRHHIRHNLKCDKVIFYVHGG--AHYLSTVRTNAYHIQRHTAALGAR-TFAPDLRLAPQ 182

Query: 570 LSY 578
             +
Sbjct: 183 FPF 185


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 614 REHLPHLISTSNVAKFRI*RKIGG 543
           REH+P++IST++   F    K  G
Sbjct: 128 REHIPYIISTASATSFEDIEKASG 151


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 407  NMVISLRCGCFMFLNRNTNKLFKLSTACSYNG 312
            NM I L    FM +  N   ++ + T C YNG
Sbjct: 1361 NMFIMLSVQLFMVVLINLGAIYHVVTVCYYNG 1392


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 234  KYNNLKVTLLIMYSMEFELKFTQ*IHTIIATSCR*LEEFICISIKEHKTSTSQRYHHIQ 410
            KY    + +L       +L  TQ I  +I T  +   +FI +S+KE   + + R  H++
Sbjct: 1104 KYKPAPMYILDEIDAALDLSHTQNIGRLIKTKFKG-SQFIIVSLKEGMFTNANRLFHVR 1161


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 438 RGERDGLKSHFEYTHTHNWYTIERRAATHTARITLAPN 551
           +G RDG K+ +E         + RRA   T+  T+ PN
Sbjct: 320 KGVRDGFKTQYEQLQKD----VSRRAVATTSASTIRPN 353


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 386 CGCFMFLNRNTNKLFKLSTACSYNGMY 306
           CG FM  + NTNK +K++ A    GM+
Sbjct: 125 CGLFMVTSSNTNK-WKIAFASFLLGMF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,145
Number of Sequences: 5004
Number of extensions: 49125
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)