Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0543
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047) 31 0.77
SB_50108| Best HMM Match : Syntaxin (HMM E-Value=8.7) 31 1.0
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.2
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21) 30 1.3
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_24016| Best HMM Match : zf-C2H2 (HMM E-Value=0.00018) 28 5.4
SB_55697| Best HMM Match : CBAH (HMM E-Value=0.014) 28 5.4
SB_20859| Best HMM Match : ADK_lid (HMM E-Value=3.3) 28 5.4
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_50210| Best HMM Match : I-set (HMM E-Value=0.11) 27 9.4
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 27 9.4
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 27 9.4
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 27 9.4
>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 372 HKTSTSQRYHHIQTNLHCTYSTR-GERDGLKSHFEYTHTHNWYTIERRAATHTARITLAP 548
+ T T++ H+ L+ T++TR L H +T ++ YT+ ATHT R +
Sbjct: 343 YATHTTRYSHYTLRTLNATHATRYSHYTLLTQHATHTTRYSHYTLLTLHATHTTRYSHNT 402
Query: 549 NLTLNA 566
LTL+A
Sbjct: 403 LLTLHA 408
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/95 (25%), Positives = 44/95 (46%)
Frame = +3
Query: 228 TSKYNNLKVTLLIMYSMEFELKFTQ*IHTIIATSCR*LEEFICISIKEHKTSTSQRYHHI 407
T++Y++ TLL +Y+ + T+ AT + ++ +H T T++ H+
Sbjct: 331 TTRYSHY--TLLTLYATHTTRYSHYTLRTLNATHATRYSHYTLLT--QHATHTTRYSHYT 386
Query: 408 QTNLHCTYSTRGERDGLKSHFEYTHTHNWYTIERR 512
LH T++TR + L + THT + T R
Sbjct: 387 LLTLHATHTTRYSHNTLLTLHAATHTTRYTTHNTR 421
Score = 33.1 bits (72), Expect = 0.19
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +3
Query: 231 SKYNNLKVTLLIMYSMEFELKFTQ*IH-TIIATSCR*LEEFICISIKE-HKTSTSQRYHH 404
++Y L TLL ++ L T H T++ T + ++ H T + H+
Sbjct: 246 AQYTILHHTLLTPHATHITLLTTHATHITLLTTHATHVARNEHYTLHYLHCTLLTFYSHY 305
Query: 405 IQTNLHCTYSTRGERDGLKS-HFEYTHTHNWYTIERRAATHTARITLAPNLTLNA 566
LH T++TR L + H +T ++ YT+ ATHT R + TLNA
Sbjct: 306 TILTLHATHTTRYAHYTLPTLHATHTTRYSHYTLLTLYATHTTRYSHYTLRTLNA 360
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 354 CISIKEHKTSTSQRYHHIQTNLHCTYSTRGERDGLK-SHFEYTHTHNWYTIERRAATHTA 530
C +K+H T+T++ H++ H T +TR + H +T + YT+ TH
Sbjct: 425 CKLLKQHATNTTRYSHYMLLTQHATRTTRHAHYTPRIPHATHTTRYAHYTLLTLHDTHAV 484
Query: 531 R 533
R
Sbjct: 485 R 485
>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
Length = 632
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 472 STLTHTTGTQSNDARRHTQRASHSPPILR*MRNLATFEVEIKCGR 606
+T TG+ +N+ TQ A P +R L T++ EI+C R
Sbjct: 361 NTSKRPTGSAANENNAETQNAYRGPSRIRQRDTLRTWDGEIRCNR 405
>SB_50108| Best HMM Match : Syntaxin (HMM E-Value=8.7)
Length = 285
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +2
Query: 419 TLHILHSRRTRRIKITFRVHSHT---QLVHNR--TTRGDTHSAHHTR 544
T H +H+ R + VH H+ VHN TT G HS H+TR
Sbjct: 233 TQHSVHNTRYTTLGTQHSVHKHSVHKHSVHNTRYTTLGTQHSVHNTR 279
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +2
Query: 383 HISTISPYSD*FTLHILHSRRTRRIKITFRVHS--HTQL-----VHNR--TTRGDTHSAH 535
H + + Y+ T H +H+ R + VH+ HT L VHN TT G HS H
Sbjct: 137 HSAHNTRYTTLGTQHSVHNTRYTTLGTQHSVHNTRHTTLGTQHSVHNTRYTTLGTQHSVH 196
Query: 536 HTR 544
+TR
Sbjct: 197 NTR 199
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 419 TLHILHSRRTRRIKITFRVHS--HTQL-----VHNR--TTRGDTHSAHHTRPQSYVKCGT 571
T H H+ R + H+ HT L VHN TT G HSAH+TR Y GT
Sbjct: 93 TQHSTHNTRHTTLDTQHSTHNTRHTTLGIQHSVHNTRCTTLGTQHSAHNTR---YTTLGT 149
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = +2
Query: 419 TLHILHSRRTRRIKITFRVHS--HTQL-----VHNR--TTRGDTHSAHHTRPQSYVKCGT 571
T H +H+ R + I VH+ +T L VHN TT G HS H+TR Y GT
Sbjct: 191 TQHSVHNTRYTTLGIQHSVHNTRYTTLGTQHSVHNTRYTTLGTQHSVHNTR---YTTLGT 247
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 26.6 bits (56), Expect(2) = 1.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 498 CTSCVCECTRNVILI 454
C SC C C+++VIL+
Sbjct: 72 CHSCACACSKSVILV 86
Score = 22.2 bits (45), Expect(2) = 1.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 528 LCVSPRVVRLCTSCVCEC 475
LC+ R+++ C SC C C
Sbjct: 42 LCM--RLLKRCHSCACAC 57
>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
Length = 472
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 425 HILHSRRTRRIKITFRVHSHTQLVHNRTTRGDTHSAHHTRPQSYVKCGT*LRSRLRSNAG 604
H ++++ T + T R H HT H T G +TR +S C T R+ N
Sbjct: 182 HAMNAQHTIT-RHTDRTHEHTDGTHEHATHGRNSRRRNTRTRSTRTCNTLKRNTRTCNR- 239
Query: 605 GVRDPTH 625
R+ TH
Sbjct: 240 --RNTTH 244
>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 378 TSTSQRYHHIQTNLHCTYSTRGERDGLKSHFEYTHTHNWYTIERRAATHTARITLAPN 551
T T Y HIQ L T+ T + +H THT N Y+ +R TH+ T PN
Sbjct: 257 THTFNGYSHIQRVL--THQTGAHTKRVLTHPTGTHTPNGYSHIQRVLTHSTG-THTPN 311
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 460 NHISSTLTHTTGTQSNDARRHTQRASHSP 546
+H LTH TGT++ +A HTQ P
Sbjct: 188 SHAQRVLTHQTGTRTPNAYSHTQLVLTQP 216
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 460 NHISSTLTHTTGTQSNDARRHTQRASHSP 546
+HI LTH+TGT + + H Q +H+P
Sbjct: 295 SHIQRVLTHSTGTHTPNRGSH-QTGTHTP 322
>SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 64 TVQKNLASTAKDKTKLSRTLTIIL*HTNQIEKSNNRINLSTRCV 195
T K LA T TK S L N+ + SNN IN T CV
Sbjct: 281 TTTKTLAETTTAATKSSGVLFYFSGSRNKHKISNNSINSDTSCV 324
>SB_24016| Best HMM Match : zf-C2H2 (HMM E-Value=0.00018)
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 354 CISIKEHKTSTSQRYHHIQTNLHCTYSTRGERDGLKSHFEYT 479
C+ IK + + +Q ++HC +ST D + + E T
Sbjct: 72 CVDIKRGLFLVRRNFTGVQAHVHCQHSTGASHDSVTTSCEVT 113
>SB_55697| Best HMM Match : CBAH (HMM E-Value=0.014)
Length = 185
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 334 DNLKSLFVFRLRNIKHPHLNDITIFRLIYIAHTPLAANA 450
+N+ + +F++ N +HP LN TIF I A+ P NA
Sbjct: 140 ENINATTLFKVLN-QHPVLNSHTIFTAIMEANNPGLLNA 177
>SB_20859| Best HMM Match : ADK_lid (HMM E-Value=3.3)
Length = 212
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +3
Query: 348 FICISIKEHKTSTSQRYHHIQTNLHCTYST 437
F+ +K+ K + +H ++ +++C+YST
Sbjct: 48 FLTSKLKKKKVDVCKAFHFVKRSIYCSYST 77
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 543 RV*CALCVSPRVVRL---CTSCVCECTRNVILIRRVRREW 433
RV C CVS VR+ C VC C +V+ + RV+ W
Sbjct: 227 RVACPCCVSVLGVRVECTCVRVVCPCCVSVLRV-RVKDSW 265
>SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 348
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 534 CALCVSPRV-VRLCTSCVCECTRNVILIRRV 445
CA C S VR + CECTRNV + RV
Sbjct: 19 CAQCQSSIASVRAMSVKYCECTRNVSQVLRV 49
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 372 HKTSTSQRYHHIQTNLHCTYSTRGERDGLKSHFEYTHTHNWYTIERRAATHTARITL 542
+ T RY ++ TN +TR + + HF+ H + W E A + +TL
Sbjct: 67 YATGIFSRYANLLTN-----TTRDDMNAAHQHFQEAHQYRWTRHEGAAGYENSGLTL 118
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 380 IHISTISPYSD*FTLHIL----HSRRTRRIKITFRVHS--HTQLVHNRTTRGDTHSAHHT 541
+H++ ++ TLH+ H+ R+ + H+ HT V T+ H+ H T
Sbjct: 61 LHVTRYMSHATRHTLHVTRYMSHATCHRQHVTRYMSHATCHTLHVTGNTSHATCHTLHVT 120
Query: 542 RPQSYVKCGT 571
R S+ C T
Sbjct: 121 RYMSHATCHT 130
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 534 CALCVSPRV-VRLCTSCVCECTRNVILIRRV 445
CA C S VR + CECTRNV + RV
Sbjct: 1565 CAQCQSSIASVRAMSVKYCECTRNVSQVLRV 1595
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,583
Number of Sequences: 59808
Number of extensions: 379866
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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