Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0543
         (628 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic pr...    25   1.5  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   6.0  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   7.9  

>AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic
           protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 434 HSRRTRRIKITFRVHSHTQLVHNRTTRGDT 523
           HSR+ R I     VH H +L  N   R D+
Sbjct: 201 HSRQRRSIVPAVPVHEHVRLRRNAAERHDS 230


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = +3

Query: 399 HHIQTNLHCTYSTRGE-----RDGLKSHFEYTHTHNW 494
           HHI  N+  T+ TRG       +GL+   +Y    +W
Sbjct: 374 HHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADW 410


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 538 VMRAVCVAARRSIVYQLC 485
           + RA CVAARR +  + C
Sbjct: 286 IQRAECVAARRKMQRERC 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,629
Number of Sequences: 2352
Number of extensions: 12412
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)