Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0543
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    29   2.1  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    29   2.1  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    29   2.1  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    29   2.1  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    29   2.1  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    29   2.1  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine r...    28   6.3  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   8.3  

>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 33  TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 73


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 158 TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 198


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 83  TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 123


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 96  TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 136


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 110 TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 150


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 430 TPLAANATD*NHISSTLTHTTGTQSNDARRHTQRASHSPPI 552
           TP A       ++ S L   T  Q++D  RH  R++  PP+
Sbjct: 157 TPFAQLLASLRNVRSNLISITNIQNSDDSRHANRSAKRPPL 197


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 370 NIKHPHLNDITIFRLIYIAHTPLAANATD*NHISSTLTHTTGTQSND---ARRHTQ 528
           N+K P  + I+ F  +        A +    H + T+ HT  T +N+   ARRHTQ
Sbjct: 617 NVKSPSNSSISAFVRVNSQRKSTRATSAVATHPTDTVIHTGITTANNRDIARRHTQ 672


>AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 13 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 280 NSN*NLHNRYIPL*LQAVDNLKSLFVFRLRNIKHPHLNDITIFRL 414
           +S  + +  YIPL L  V ++ S+ +FR   IK+  L ++    L
Sbjct: 184 SSTISTNETYIPLLLIIVSHIVSILIFRCLEIKNKKLREVVDINL 228


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 167 LLDFSIW-LVCYKMIVKVRDNLVLSFAVLARFFCTVYIMY 51
           +L  S W +V YK ++ V    ++SF VL    CT  + Y
Sbjct: 38  ILKKSPWNMVFYKWLILVFQLAIISFNVLLTILCTPVVFY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,536
Number of Sequences: 27780
Number of extensions: 282132
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)