Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5NU23 Cluster: YdjC family protein; n=2; Methylobacter...    38   0.21 
UniRef50_Q11VY3 Cluster: Putative uncharacterized protein; n=1; ...    34   2.0  
UniRef50_A4QP11 Cluster: Zgc:162611 protein; n=2; Danio rerio|Re...    33   6.0  
UniRef50_A2SI55 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q6YWM6 Cluster: Putative uncharacterized protein OSJNBa...    33   6.0  

>UniRef50_A5NU23 Cluster: YdjC family protein; n=2; Methylobacterium
           sp. 4-46|Rep: YdjC family protein - Methylobacterium sp.
           4-46
          Length = 292

 Score = 37.5 bits (83), Expect = 0.21
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 322 NSHQNCWVNPQHGLLKHGCALVIASRRGARARTYIRDSGGVMA---ARVSAEGAGPSYAS 492
           + HQ+  V P  GL   G  L + +RRG   RT++RD G  +A   AR SA  AG   A 
Sbjct: 129 DGHQHVHVLP--GL--RGALLAVLARRGLAGRTWLRDPGDRLAALLARPSAPKAGLVRAL 184

Query: 493 VLNFKEAKV 519
            L F+ A V
Sbjct: 185 ALGFRRAAV 193


>UniRef50_Q11VY3 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 539

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -3

Query: 298 VQRVSQNHKQNTKARFTN*FDRNW*HTTLTLAGPYLHQKNSLPSADSRFFSILNKAHEWN 119
           ++ ++QN + +T   F N    N   TT+ L+  YL  ++ +P A    FS+   A + N
Sbjct: 237 IKLLAQNCRVSTLPNFAN--KPNL--TTVNLSENYLTFEDLIPLASLPNFSVFTYAPQKN 292

Query: 118 LSIESAV-CGEKHV*KRQITIEPYFVHNSHMW 26
           +SI + V   E+++   QI I+P    N+  W
Sbjct: 293 ISIPAYVDIRERNMYTYQIPIDPALTTNTFTW 324


>UniRef50_A4QP11 Cluster: Zgc:162611 protein; n=2; Danio rerio|Rep:
           Zgc:162611 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 537

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 75  FYTCFSPQTALSIDRFHS--CALFSIEKNLESADGSEFF*CKYGPARVSVVC---YQFRS 239
           F++   P T +S+DR+H+  C L   + N +  DG   F  K     +   C   YQ R 
Sbjct: 170 FFSVPFPSTVMSMDRYHAILCNLHLSDPNADENDGDTLFKVKSLMDSIRQACSAHYQPRR 229

Query: 240 N*FVNRAFV 266
           N  V+  FV
Sbjct: 230 NVVVSERFV 238


>UniRef50_A2SI55 Cluster: Putative uncharacterized protein; n=1;
           Methylibium petroleiphilum PM1|Rep: Putative
           uncharacterized protein - Methylibium petroleiphilum
           (strain PM1)
          Length = 359

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 313 TCPNSHQNCWVNPQHGLLKHGCALVIASRRGARARTYIRDSGGVMAARVSAEGAGPSYAS 492
           +CP  HQ+  +    GLL+ GC     +R+    R+Y   + GV    ++ + AG    S
Sbjct: 82  SCP--HQHVDITGADGLLQRGCLSATRTRQSGSVRSYGTQAEGVSNWHMTIDAAGGQVIS 139

Query: 493 V 495
           V
Sbjct: 140 V 140


>UniRef50_Q6YWM6 Cluster: Putative uncharacterized protein
           OSJNBa0089L03.41; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0089L03.41 - Oryza sativa subsp. japonica (Rice)
          Length = 128

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 355 HGLLKHGCALVIASRRGARARTYIRDSGGVMAARV 459
           HG L+ G AL  A+R G R R      G V AAR+
Sbjct: 72  HGYLRRGAALAAAARGGERRRREAASGGDVTAARL 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,056,557
Number of Sequences: 1657284
Number of extensions: 10691400
Number of successful extensions: 25612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25605
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)