Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.5  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 549 PLRGPQCFLYYFRLFEVEHGRVRGSCALSRH 457
           PLR     +   RL E   G ++  C LS H
Sbjct: 234 PLRKATAKIAAKRLIEDFSGYIKPKCVLSDH 264


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 345 NPTILMRIWTR 313
           N T+L+ +WTR
Sbjct: 53  NSTVLLALWTR 63


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 417 PGARSAP*SDHERASMLQQAMLG 349
           PGA S P +D+      Q ++LG
Sbjct: 121 PGATSQPPTDNSHVHHHQTSLLG 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,502
Number of Sequences: 336
Number of extensions: 2611
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)