Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.35 
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.5  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   5.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   10.0 
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   10.0 

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 497  STDA*EGPAPSADTRAAITPPLSLI*VRAR-APRREAITSAHPCFNRP 357
            ST A  GP P    + A T P+S+   +++ AP    +++A    NRP
Sbjct: 979  STAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRP 1026


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 373 HASTGHVGG*PNNFDANLDTFSVLCVQRVSQNHKQNTKA 257
           H+ST HV   P + D  +D  S +  Q+ S ++K   KA
Sbjct: 44  HSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKA 82


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 94  HKQHFLSIDSIRALYSVLKKT*NRPTEVNFFDVNTVRPGSVW 219
           ++Q+++    IR L   +K            DVN V PGS W
Sbjct: 39  NRQYYILEKKIRKLMFAMKALLEETKHSTKDDVNLVIPGSTW 80


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +3

Query: 381 ARDRFTARSARPDLYKRQRRRYGCAR--VC*GRRTLLRVRAQLQRGESNKENIEAHAEEA 554
           A    T R     L K  R  +G     VC  +R  L   A  Q  E+ K+N+E HAE A
Sbjct: 145 ANAALTLREQEKVLEKVSRENFGLRIKIVCLEKR--LESMAPEQIKEAVKDNVELHAERA 202


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 112 SIDSIRALYSVLKKT*NRPTEVNFFDVNTVRPGSVWCATNFDQISS*TVLLCSVCD 279
           S+D + ++ SV +K  NRP  ++   VN V   +      +  +S+   +L + CD
Sbjct: 325 SLDLLHSIRSV-RKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACD 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,263
Number of Sequences: 5004
Number of extensions: 45043
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)