Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    31   0.62 
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264...    28   5.8  
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    27   7.7  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 194 IRSGQGQCGVLPISIKLVRKPCFCVLFVILAYALNAQNAKRV 319
           +R+G  +CG LP+  KLV + C   L V +  A+  ++A  V
Sbjct: 487 LRAGGHECGCLPVLAKLVMEHCVARLDVAMFNAVLRESANEV 528


>07_03_0103 -
           13425411-13425713,13425874-13425974,13426410-13426471,
           13426951-13427123
          Length = 212

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 409 RARTYIRDSGGVMAARVSAEGAGPSY 486
           RA  +++  GG  A R SA GAGP Y
Sbjct: 11  RATPHLQTLGGGAARRQSAAGAGPCY 36


>03_05_0916 -
           28762214-28762414,28763144-28763242,28763573-28763998,
           28764259-28764501,28764706-28764927,28765392-28765721,
           28767380-28767800,28768292-28768404,28769224-28769367,
           28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 418 SGRALRAVKRSRARIHASTGHVGG 347
           +GR L A K    RI+AS GH GG
Sbjct: 26  AGRLLVAGKDGSLRIYASPGHAGG 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,905
Number of Sequences: 37544
Number of extensions: 303440
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)