Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2789| Best HMM Match : MAM (HMM E-Value=0.00013)                    31   0.64 
SB_2603| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_58518| Best HMM Match : WRKY (HMM E-Value=0.072)                    28   4.5  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_2789| Best HMM Match : MAM (HMM E-Value=0.00013)
          Length = 363

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 555 TPPLRGPQCFLYYFRLFEVEHGRV 484
           +PPL GPQC ++++ ++  + GR+
Sbjct: 9   SPPLTGPQCLMFWYHMYGGDMGRL 32


>SB_2603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 45  TKYGSIVICRFYTCFSPQTALSIDRFHSCALFSIEKNL 158
           TKY  + +C F  CF P  A S     + A F++ ++L
Sbjct: 252 TKYLFVALCAFTLCFIPLMAASRYESLNAAFFTLPRSL 289


>SB_58518| Best HMM Match : WRKY (HMM E-Value=0.072)
          Length = 171

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 264 QKHGLRTNLIEIGSTPH*PWPDRIYIKKIHFRRPILGFFQY 142
           QKH  R +L+   ++P  P   RIY     + R +LG FQY
Sbjct: 130 QKHLKRHDLLRYTTSPW-PHSPRIYSSPTSYPRGLLGNFQY 169


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 139 NKAHEWNLSIESAVCGEKHV*KRQITIEPY 50
           N+ H +N+S E  VC    +  RQI + P+
Sbjct: 216 NEPHSYNISYEEHVCVMDEIYSRQIFLTPF 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,480
Number of Sequences: 59808
Number of extensions: 341218
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)