Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   6.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   6.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 351 PTWPVEAWMRARD-RFTARSARPDLYKRQRRR 443
           P W    W + RD + T++  R   + +Q  R
Sbjct: 420 PAWKTHVWKKGRDKKSTSKKPRRKFHFKQIAR 451


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SPQTALSIDRFHSCALFSIEKNLESADGSEFF 185
           SP++    +  ++   F + + LES+DG+  F
Sbjct: 81  SPESRGRSNASNTSKTFILSEKLESSDGTSLF 112


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +1

Query: 79  IRVFHHKQHFLSIDSIRALYSVLKK 153
           I +FH   +F+++++  ++YS  ++
Sbjct: 179 IHLFHDASNFIAMETFPSVYSKTRR 203


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 259 LLCSVCDFGLRAE 297
           L+C + DFGL  E
Sbjct: 772 LVCKIADFGLSRE 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,920
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)