Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0542
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein           28   3.7  
At5g43755.1 68418.m05351 expressed protein ; expression supporte...    28   4.9  
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    28   4.9  
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR...    28   4.9  
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    27   8.5  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    27   8.5  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    27   8.5  
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    27   8.5  

>At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein
          Length = 774

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 69  CRFYTCFSPQTALSIDRFHSCALFSIEKNLESADGSEFF*CKYGPARVSVVC 224
           C+ YT +       +DRFH  A  + +++LE      F  C Y     SV+C
Sbjct: 212 CKHYTAYDLDNWNGVDRFHFNAKVT-QQDLEDTYNVPFKSCVYEGKVASVMC 262


>At5g43755.1 68418.m05351 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 331 QNCWVNPQHGLLKHGCALVIASR-RGARARTYIRDSGGVMAARVSAEGAGPSYASVLN 501
           Q+ W  P  G +K        +R RG+ A   IRD  GV      A G      +VLN
Sbjct: 47  QSQWQKPHMGWIKCNYDGSFVNRVRGSTAAWIIRDDNGVFKGAAQATGDCKLLVNVLN 104


>At4g32620.1 68417.m04644 expressed protein predicted protein
           T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 282 KITNRTQKHGLRTNLIEIGSTPH*PWPDRIYIKK 181
           K+  +  +HG+ + L+  GS+    WP  +  KK
Sbjct: 762 KVMQKRSRHGISSGLVSRGSSSAEAWPTSVCYKK 795


>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1017

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 258  AFVFCL*FWLTR*THKTLNVSKFASKLLG*PPTWPVEAWMRARDRFTARS 407
            +FVFC+     + + KT+  S    +++     +PVE W R  D F  R+
Sbjct: 889  SFVFCVVVSRNQKSDKTIPPSLLWRRIIAQDEGYPVEVWNRIGDVFKYRT 938


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 448 AARVSAEGAGPSYASVLNFKEAKVIKKTLRPTQRRR 555
           AA VS+  AGPSY+    F   K     LR   R R
Sbjct: 654 AAAVSSSTAGPSYSIGAAFLATKFAANALRTIHRNR 689


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 448 AARVSAEGAGPSYASVLNFKEAKVIKKTLRPTQRRR 555
           AA VS+  AGPSY+    F   K     LR   R R
Sbjct: 661 AAAVSSSTAGPSYSIGAAFLATKFAANALRTIHRNR 696


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 448 AARVSAEGAGPSYASVLNFKEAKVIKKTLRPTQRRR 555
           AA VS+  AGPSY+    F   K     LR   R R
Sbjct: 661 AAAVSSSTAGPSYSIGAAFLATKFAANALRTIHRNR 696


>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 297 THKTLNVSKFASKLLG*PP-TWPVEAWMRARDRFTARSAR 413
           T+K  NV+KF + LLG     W V A++R  +  T  S+R
Sbjct: 736 TNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSR 775


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,680
Number of Sequences: 28952
Number of extensions: 234520
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)