Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0541
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 187 1e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 65 7e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 53 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 1e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.065
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.4
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 5.6
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 7.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 9.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 187 bits (456), Expect = 1e-48
Identities = 95/137 (69%), Positives = 99/137 (72%)
Frame = +1
Query: 253 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 432
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 433 QIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT* 612
QI+FETFN PA YVAIQAVLSLYAS P + P
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Query: 613 PGRDLTDYLMKILTERG 663
GRDLTDYLMKIL ERG
Sbjct: 181 AGRDLTDYLMKILMERG 197
Score = 124 bits (300), Expect = 9e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 77 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 256
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +3
Query: 510 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
RTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 147 RTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 268 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 447
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 448 TFNTPAMYVAIQAVLSLYAS 507
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 507 RRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
R TG V+DSGDGV+H +P+ EGY + +I + LA
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 244
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (241), Expect = 1e-22
Identities = 42/83 (50%), Positives = 63/83 (75%)
Frame = +1
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 435
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 436 IMFETFNTPAMYVAIQAVLSLYA 504
MFE + +YVAIQAVLSLYA
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA 144
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 253
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 513 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
++G+V+DSGDGV+H VP+YE L H + RLD+A
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/140 (40%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 432
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 433 QIMFETFNTPAMYVAIQAVLSLYASVVPP---VSCWTPATVSPTPCPSTKDTHSPTPSCV 603
+ +ET N PA+ ++Q VL+LYAS + C T S P P+
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIPSAIQQ 182
Query: 604 WT*PGRDLTDYLMKILTERG 663
GRD+TDYL L + G
Sbjct: 183 EEIGGRDVTDYLQLQLRKSG 202
Score = 69.7 bits (163), Expect = 3e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 49.6 bits (113), Expect = 4e-07
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = +3
Query: 510 RTTGIVLDSGDGVSHTVPIYEGYALPHAI 596
RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 152 RTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 2e-12
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +1
Query: 265 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 444
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 445 ETFNTPAMYVAIQAVLSLYAS 507
E+ PA Y+A Q + +AS
Sbjct: 123 ESLRCPATYLAKQETCAAFAS 143
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 80 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 181
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 65.3 bits (152), Expect = 7e-12
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +1
Query: 280 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 459
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 460 PAMYVAIQAVLSLYASVVPPVS 525
P++ I + S Y + P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 190
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 513 TTGIVLDSGDGVSHTVPIYEG 575
++GIVL+ G+ SH +P+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1
Query: 289 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 468
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 469 YVAIQAVLSLYAS 507
Y+ QAV +A+
Sbjct: 134 YLTKQAVCVAFAN 146
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 80 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 250
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 280 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 447
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 448 TFNTPAMYVAIQAVLSLYA 504
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 340 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 513
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -3
Query: 261 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 97
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 96 NAATSSS 76
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 248 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 159
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 140 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 253
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -2
Query: 271 GSGYLFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 98
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 514 PPVSCWTPATVSPTPCPSTKDTHSP 588
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 293 PCSMGYLRVRIPLCSVPHLLHKSPSVPYRP 204
P + Y PL +VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 240 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 124
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 382 LLTEAPLNPKANREKMTQIMFETFN 456
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 122 TYRSHCLLPTRQLLRRTS*ISEI 54
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 418 REKMTQIMFETFNTPAMYVAIQAVLSLYASVVPPVSCWTPATVSPTPCPSTKDTHSPTP 594
RE++ Q+ + P+ Y+ LS Y S P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRS---PNSY-------PSLLPSTHSPHSPAP 182
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 565 STKDTHSPTPSCVWT*PGRDLTDYLMKILTERG 663
S D P P + P R+L +M ++TE G
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 522 IVLDSGDGVSHTVPIYEGYALPHAILRLDL 611
+V+DSG +H +P+ + A+ R+D+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDV 188
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 396 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRR 512
+PQ + E++ D++R++ +RH RR P +A + RR
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARR 1463
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 511 VPPVSCWTPATVSPTPCPSTKDTHSPTPS 597
VP S P+ P P PS++ P PS
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 461 PPCTSPSKPCSRCTRPSYHRYRAGLRRRCL----PHRAHLRRIRTPPRHPASGLSP 616
P SP S +RPSYH+ + + ++ + P LR RT P + P
Sbjct: 465 PNAISPKAKFSLPSRPSYHKDNSFISKQAIDKSNPFEEALRLERTSPVKELPAIRP 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,748
Number of Sequences: 5004
Number of extensions: 66667
Number of successful extensions: 249
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -