Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0539
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 129 2e-31
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 127 1e-30
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 80 2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 5e-10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 3.3
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 3.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.3
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 7.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 7.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 129 bits (312), Expect = 2e-31
Identities = 55/71 (77%), Positives = 64/71 (90%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDIIRKLADQ 435
DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D IR++AD
Sbjct: 69 DLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADN 128
Query: 436 CTGLQGFLIFH 468
C+GLQGFL+FH
Sbjct: 129 CSGLQGFLVFH 139
Score = 107 bits (256), Expect = 1e-24
Identities = 45/67 (67%), Positives = 53/67 (79%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 233 HVPRAVF 253
+VPR+++
Sbjct: 61 YVPRSIY 67
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 127 bits (306), Expect = 1e-30
Identities = 51/71 (71%), Positives = 65/71 (91%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDIIRKLADQ 435
DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+ IR++AD
Sbjct: 73 DLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADN 132
Query: 436 CTGLQGFLIFH 468
C+GLQGFL+FH
Sbjct: 133 CSGLQGFLVFH 143
Score = 99 bits (238), Expect = 2e-22
Identities = 49/72 (68%), Positives = 54/72 (75%), Gaps = 5/72 (6%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 217
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 218 TGAGKHVPRAVF 253
TG GK VPR+++
Sbjct: 60 TGQGKFVPRSIY 71
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 79.8 bits (188), Expect = 2e-16
Identities = 34/73 (46%), Positives = 49/73 (67%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDIIRKLA 429
L DLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD++R+ A
Sbjct: 65 LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124
Query: 430 DQCTGLQGFLIFH 468
+ C LQGF + H
Sbjct: 125 EACDALQGFQLTH 137
Score = 49.6 bits (113), Expect = 2e-07
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.4 bits (135), Expect = 5e-10
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 236 VPRAVFAIXXXXXXMRSALAHT-DSCFIQNNLLLVR 340
+PRA+ I + + L+ T S + N+L+ +
Sbjct: 61 IPRAIL-IDLEPRVVNNILSDTYGSLYNPENILITK 95
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 132 STASSLMARCPQTRPSGVETILSTLSSARPELASTYPVLSS 254
ST SSL + ++PS T ST SSA P S+ + SS
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSS 213
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 106 ITDLDSGLANVYRDALTHFNLSF 38
+T +D GLA YRD TH ++ +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 288 ADLINNSRFKIAKTARGTCLPAPVSLKKVLKESSPPPM 175
AD+IN SR+ I + + T + L P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 151 WPDAHRQDHRGWRRFFQHFLQR 216
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 160 HLAIRLDAVLQTV-KLPAGITDLDSGLANVYRDALTHFNLSF 38
H I+ D L + K + +D GLA YRD TH ++ +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 337 KEDAANNYARGHYTIGKEIVDLV 405
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 75 TLAKPESRSVMPAGSFTVWSTASSLMARCP 164
+L+ P SR++ P S + STASSL P
Sbjct: 181 SLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,311
Number of Sequences: 5004
Number of extensions: 42685
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -