Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0537
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XDU7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q59U44 Cluster: Potential microtubule motor complex pro...    33   6.7  
UniRef50_Q22458 Cluster: Putative uncharacterized protein T13C5....    32   8.8  

>UniRef50_Q4XDU7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 530

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 361 NYTSFYSIHLRCGSDCITNRVKFVNNNLKTRVNFSQNDE*TQRGALNPAPG 209
           NY+SF+S H+    +   N  KF+N    TR++ +++   +    +N   G
Sbjct: 253 NYSSFHSFHIEIEKNAFQNEEKFMNTKKNTRISNTRSSSISMDKFVNSEKG 303


>UniRef50_Q59U44 Cluster: Potential microtubule motor complex
           protein Kip1; n=2; Candida albicans|Rep: Potential
           microtubule motor complex protein Kip1 - Candida
           albicans (Yeast)
          Length = 911

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 319 DCITNRVKFVNNN-LKTRVNFSQNDE*TQRGALNP 218
           DC TN  KF+NNN +  R+N  Q D  +Q   +NP
Sbjct: 742 DCQTNLQKFINNNDICERINKFQQDNNSQLDKINP 776


>UniRef50_Q22458 Cluster: Putative uncharacterized protein T13C5.2;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein T13C5.2 - Caenorhabditis elegans
          Length = 434

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 442 FRYHHKICDDETSHSKRDSIAFYSISCQGCNIPQL*SIC 558
           + YHH  C +  +HS       Y  +CQG  IP L   C
Sbjct: 188 YNYHHNNCCNYHNHSCNACPKVYDTTCQGFGIPNLLQWC 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,824,825
Number of Sequences: 1657284
Number of extensions: 10442474
Number of successful extensions: 23051
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23044
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)