Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0537
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   3.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.3  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 505 FYSISCQGCNIP 540
           F+ ISC GCNIP
Sbjct: 217 FFYISCYGCNIP 228


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +1

Query: 292 RISHDL*YSHYRILDELNR-RKYSCVSLKSRDH*FCTRIR*MYGLRLTLIKFR-YHHKIC 465
           ++ HD+ Y++YR+L  L      S +S     H F   +  +  + L L++ + +    C
Sbjct: 289 KVFHDIKYANYRLLHNLRAFPGISAISSSYLVHIFMILLGVVAAIFLALLREKMFTAGFC 348

Query: 466 DDETSHSKRD--SIAFYSISCQGC 531
           D   S S      I+F S+ C+ C
Sbjct: 349 DSGASGSSASILGISFPSL-CRTC 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,736
Number of Sequences: 5004
Number of extensions: 44576
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)