Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0537
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    29   2.1  
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48...    29   3.7  
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    29   3.7  
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    27   8.5  

>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 229 ALNPAPGPRGERGYVGSWERLPMPA 155
           AL P PGP G +    SWE +P P+
Sbjct: 446 ALQPQPGPVGHQVERWSWESIPSPS 470


>05_01_0072 -
           486211-486254,486350-486524,486658-486852,487489-487599,
           487693-487905,488432-488539,488621-488762,489157-490418,
           490460-490480,490842-491228
          Length = 885

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 115 YGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSAFIHRFGKS 264
           YG     +G +   L S V+PS   +P  P      SMR+ + I  FG S
Sbjct: 463 YGNLGFGLGYSGSPLMSPVLPSSPAAPGSPLRHGERSMRMQSGIRNFGGS 512


>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 104 YHHATVQRTMLWEKITFSWHRQSFPATYVAPLTPRTGCRVQCASLRLF 247
           + +  ++R + WEK   +W  Q+FP  Y      RT C V C    L+
Sbjct: 115 FRNEFMRRVVPWEKGNLTW--QNFP--YYVKYDARTTCSVLCLRTELY 158


>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 406 GCECKINDLSILERR-NYTSFYSIHLRCGSDCI 311
           G EC  +D  +   R + +SF+ ++L CG  C+
Sbjct: 816 GTECSADDNEVGSNRLSLSSFWGLYLICGFSCV 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,448
Number of Sequences: 37544
Number of extensions: 271589
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)