Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0537
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)                    32   0.30 

>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
          Length = 1209

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 319 DCITNRVKFVNNNLKTRVNFSQNDE*TQRGALNPAPG-PRGERGYVGSWERLP-MPAERY 146
           D I N  K     L T  NF  N++    G++ P PG   GE+GYVG   +LP M ++ +
Sbjct: 730 DRIINGKKKRFGLLPTEENFIFNED----GSVTPKPGYSLGEKGYVGDISKLPGMDSDEH 785

Query: 145 F 143
           F
Sbjct: 786 F 786



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 319 DCITNRVKFVNNNLKTRVNFSQNDE*TQRGALNPAPG-PRGERGYVGSWERLP-MPAERY 146
           D I N  K     L T  NF  N++    G++ P PG   G++GYVG   +LP M ++ +
Sbjct: 546 DRIINGKKKRFGLLPTEENFIFNED----GSVTPKPGYSLGKKGYVGDISKLPGMDSDEH 601

Query: 145 F 143
           F
Sbjct: 602 F 602



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 319  DCITNRVKFVNNNLKTRVNFSQNDE*TQRGALNPAPG-PRGERGYVGSWERLP-MPAERY 146
            D I N  K     L T  NF  N++    G++ P PG   G++GYVG   +LP M ++ +
Sbjct: 920  DRIINGKKKRFGLLPTEENFIFNED----GSVTPKPGYSLGKKGYVGDISKLPGMDSDEH 975

Query: 145  F 143
            F
Sbjct: 976  F 976


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,272,474
Number of Sequences: 59808
Number of extensions: 345374
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)