Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0537
(595 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY128472-1|AAM75065.1| 836|Drosophila melanogaster RE28238p pro... 29 6.3
AE014134-2320|AAN10833.1| 836|Drosophila melanogaster CG6043-PC... 29 6.3
AE014134-2318|AAN10831.1| 759|Drosophila melanogaster CG6043-PB... 29 6.3
AE014134-2317|AAF53274.2| 759|Drosophila melanogaster CG6043-PA... 29 6.3
AE014134-2316|AAN10830.1| 918|Drosophila melanogaster CG6043-PD... 29 6.3
M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collag... 28 8.3
M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type I... 28 8.3
J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV pro-co... 28 8.3
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 28 8.3
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 28 8.3
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 28 8.3
>AY128472-1|AAM75065.1| 836|Drosophila melanogaster RE28238p
protein.
Length = 836
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 100 VLPSRYGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSA 240
VLP P GKN Q ASA P P PS P + RLSA
Sbjct: 179 VLPPPPPPPQPQSGKNGTQGASAAPPP--PPPQQPSTLAPPTGRLSA 223
>AE014134-2320|AAN10833.1| 836|Drosophila melanogaster CG6043-PC,
isoform C protein.
Length = 836
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 100 VLPSRYGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSA 240
VLP P GKN Q ASA P P PS P + RLSA
Sbjct: 179 VLPPPPPPPQPQSGKNGTQGASAAPPP--PPPQQPSTLAPPTGRLSA 223
>AE014134-2318|AAN10831.1| 759|Drosophila melanogaster CG6043-PB,
isoform B protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 100 VLPSRYGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSA 240
VLP P GKN Q ASA P P PS P + RLSA
Sbjct: 102 VLPPPPPPPQPQSGKNGTQGASAAPPP--PPPQQPSTLAPPTGRLSA 146
>AE014134-2317|AAF53274.2| 759|Drosophila melanogaster CG6043-PA,
isoform A protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 100 VLPSRYGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSA 240
VLP P GKN Q ASA P P PS P + RLSA
Sbjct: 102 VLPPPPPPPQPQSGKNGTQGASAAPPP--PPPQQPSTLAPPTGRLSA 146
>AE014134-2316|AAN10830.1| 918|Drosophila melanogaster CG6043-PD,
isoform D protein.
Length = 918
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 100 VLPSRYGPKNNAVGKNNVQLASAVVPSYLRSPSHPSDRVPGSMRLSA 240
VLP P GKN Q ASA P P PS P + RLSA
Sbjct: 102 VLPPPPPPPQPQSGKNGTQGASAAPPP--PPPQQPSTLAPPTGRLSA 146
>M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collagen
protein.
Length = 1775
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
>M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type IV
collagen protein.
Length = 1775
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
>J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV
pro-collagen protein.
Length = 1775
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 235 RGALNPAPGPRGERGYVGS 179
RG P PGP+G RGYVG+
Sbjct: 397 RGTPGP-PGPKGPRGYVGA 414
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,683,971
Number of Sequences: 53049
Number of extensions: 496389
Number of successful extensions: 949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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