Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0537
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41700.1 68415.m05151 ABC transporter family protein similar ...    29   3.1  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    28   5.4  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    27   9.4  
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote...    27   9.4  

>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 499 IAFYSISCQGCNIPQL*SICWRICHGLF 582
           I F SI C GC+I    S+ WR C  LF
Sbjct: 875 IGFISIQCCGCSIISR-SMFWRHCKALF 901


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 PSRYGPKNNAVGKNNVQLASAVVPSYLRSPS 198
           P +YGP    V  +   ++SA  PS+L  PS
Sbjct: 95  PRKYGPDGTVVALSPKPISSAPAPSHLPPPS 125


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 454 HKICDDETSHSKRDSIAFYSISC 522
           H+IC D+   + +D + F SI C
Sbjct: 486 HRICQDKKKFNGKDDVYFCSIKC 508


>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 960

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 344 IEGSIVASL*NREIINFALASVKCTALD 427
           I+ SI  S+  REI++    ++KCTA+D
Sbjct: 898 IDSSIDTSVHQREIVHVMNLALKCTAID 925


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,642
Number of Sequences: 28952
Number of extensions: 230175
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)