Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0536
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    29   0.51 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   6.3  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   6.3  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 510 GVVWGDGTSSGTVFDS*CTLRSSPGTLKTVRSST 409
           G+  GDG  S  V  + C+   SPG LKT   ST
Sbjct: 192 GIQIGDGAGSSCVEGAYCSYACSPGMLKTQWPST 225


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -1

Query: 247 SSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFCLLLSEPGPSAGGTEWSCFFRSC 68
           S S+ G++  ++  P ++ T TSSS  +  S+         S   PS+  ++ S   +S 
Sbjct: 120 SLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSS 179

Query: 67  TCSMSSGQRSGCAGS 23
           + S SS + S  + S
Sbjct: 180 SSSSSSSKSSSSSSS 194


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 238 RMTKLNWRAYARRSVNIWGSVRDWYCSSQ 324
           R+  + WR Y R+S+N +    + YC  +
Sbjct: 260 RLNPVVWRTYLRKSLNSYVDKLEVYCQKR 288


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
 Frame = +3

Query: 243 DEIKLEGVCASVGQHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAAS-------PQRLD 401
           D +K+E + ASVG  LG  Q L L        G+     G  R H  S        Q L 
Sbjct: 207 DHLKIEKLYASVGSSLGGMQSLTLGALAPHRVGRIASISGGARSHPYSIALRFTQRQILM 266

Query: 402 TSPYW 416
             PYW
Sbjct: 267 NDPYW 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,668
Number of Sequences: 5004
Number of extensions: 50127
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)