Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0536
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1109 + 30965143-30965312,30965406-30965586,30965669-309661... 33 0.13
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 31 0.52
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159... 30 1.2
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 30 1.2
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 30 1.2
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 30 1.6
12_02_0905 - 24188563-24189189,24189648-24190577 29 2.1
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 29 2.1
10_08_0898 + 21424379-21424792,21424974-21425723 29 2.8
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 29 3.7
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 29 3.7
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.7
10_02_0069 + 4892849-4892939,4893319-4893414,4894076-4894258,489... 28 4.9
06_01_0759 + 5674785-5674807,5675276-5675528,5675863-5676126 28 4.9
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043... 28 4.9
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 4.9
11_06_0073 + 19817084-19817388,19817777-19818023 28 6.5
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 6.5
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 6.5
04_04_0549 - 26179668-26181176 28 6.5
04_04_1112 + 30984925-30985101,30985204-30985851 27 8.5
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902... 27 8.5
>04_04_1109 +
30965143-30965312,30965406-30965586,30965669-30966100,
30966176-30966277,30966376-30966681,30966755-30966817,
30967758-30967856
Length = 450
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Frame = +3
Query: 39 DRWP-DDIEHV--QLRKKHDHSVPPADGPGSESNKQNKAKTAEPN---IDFELDVKVHIN 200
D W D++ V Q RK + PP + GS+S ++ T+ N + ++D IN
Sbjct: 221 DHWAKDEVMKVSYQKRKNRNAGNPPCNASGSQSIAMHQQFTSIDNGRKLVSDIDPSTKIN 280
Query: 201 SGKCVLHTKEPLKDDEIKLEGVCAS---VGQHLGVCQR 305
S K + K+ L+ ++ E + V +H+G C+R
Sbjct: 281 SDKGGIIDKKILRTEDTTYEHTAEAREPVQEHMGGCKR 318
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 408 PYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRNQESVPVRVDNAAEAF--PER 581
P+ PSS+ D+T + R +R + P+ KE + E+ +R + E F PE+
Sbjct: 446 PHSFPPSSQISDITEEHEAQRVAHRAESEPPEEHCKEVQCIETNKLRSRRSQEFFQTPEK 505
Query: 582 RTN 590
+T+
Sbjct: 506 KTH 508
>05_03_0597 +
16014809-16015120,16015234-16015398,16015497-16015957,
16016057-16016233,16016331-16016679
Length = 487
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 321 PTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEF 437
P +RG V GG P+ +A P L SP SPSS F
Sbjct: 44 PRGFSRGGARVGGGVPKFKSAQPPSLPLSPPPVSPSSYF 82
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 219 HTKEPLKDDEIKLEGVCASVGQHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRL 398
H + K DE+ L AS G+H+ +R ++P ++ + G GG RL + +++
Sbjct: 49 HPRPDAKHDELILAVPRASPGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQI 108
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 219 HTKEPLKDDEIKLEGVCASVGQHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRL 398
H + K DE+ L AS G+H+ +R ++P ++ + G GG RL + +++
Sbjct: 55 HPRPDAKHDELILAVPRASSGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQI 114
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +3
Query: 366 PRLHAASPQRLDTSPYWT-SPSSEFRDLTS-RYITSRK----PYRRKFRHPKRRLKESRN 527
P H +P R SP SPS R L S R+++ R+ P RR+ P+RRL R
Sbjct: 297 PIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRR 356
Query: 528 QESVPVR 548
S P R
Sbjct: 357 MWSPPRR 363
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -3
Query: 173 KVYVRLRSFGLVLFVALRARTVRWRHGVV 87
KV +R R F LVL V LRA T R RH V
Sbjct: 178 KVTLRPRLFELVLNVMLRAATTRRRHASV 206
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 258 EGVCASVGQHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEF 437
+ + +S G H + +V+ L G G RP L+ A +R D +W P+
Sbjct: 217 DSILSSSGIHPYLRSLMVVGLAGRFELGLGSRHGARPNLNRALKRRDDDGAWWMWPAVPV 276
Query: 438 RDLT 449
+D+T
Sbjct: 277 KDIT 280
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 367 HGCTPQAPSASTPARTGPHRLQSSGT*PQGTLRVENRTGGS--SVTPNDASRKVG 525
H P+ PS S+P+ + S P GT R GGS +P A +VG
Sbjct: 216 HSLVPRPPSQSSPSSSCSSSDFPSSNKPSGTARPNGSGGGSRGKKSPGPAGAEVG 270
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 28.7 bits (61), Expect = 3.7
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Frame = +3
Query: 6 VQRQSSLPAHPDRWPDDIEHVQLRKKHDH--SVPP---ADGPGSESNK--QNKAKTAEPN 164
V+R H WP ++K D + PP A P E K + KAK A
Sbjct: 63 VRRLHKSGKHATVWPSPPVAAAAKQKPDEVAAAPPPAAAPAPAGERGKGAEKKAKEAAKE 122
Query: 165 IDFELDVKVHINSGKCVLHTKEPLKDDEIKLEG 263
E K K K+P KDD K EG
Sbjct: 123 AGTESSEKKPEKEKKA--EAKKPAKDDAAKKEG 153
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -1
Query: 409 GLVSRRWGLAACSRGRPPGTPHCPRASRVGSCSTSL*QTPRC*PTDAHTPSN---LISSS 239
G +S G AA + PP C S S SL P+C P A +PS ++SSS
Sbjct: 224 GFISSSTGTAARDQPEPPPLEKC-------SLSLSLGPDPKCMPAIASSPSESSCILSSS 276
Query: 238 FKGSLVCS 215
+ CS
Sbjct: 277 SRSFSDCS 284
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +3
Query: 3 GVQRQSSLPAHPDRWPDDIEHVQLRK-KHDHSVPPADGPGSESNKQN-KAKTAEPNIDFE 176
G Q S A + ++ ++L D+ + A+ S+SN + TAE + +E
Sbjct: 1657 GAQESSEQEADQPFYVQPVQQLELTTDSKDNQLVEAEETSSQSNIVTPEDPTAEDRVAYE 1716
Query: 177 LDVKVHINSGKCVLHTKEPLKD-DEIKLE 260
+D V I+ G L E +KD D I+ E
Sbjct: 1717 IDPSVDIDQGH-ELELVEEVKDTDAIEAE 1744
>10_02_0069 +
4892849-4892939,4893319-4893414,4894076-4894258,
4894917-4895941
Length = 464
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Frame = -1
Query: 166 MFGSAVLALFCLLLSEPGPSAGGTEWSC---FFRSCTCSM------SSGQRSGCAGS 23
M G+ F S+PG SA G S F+ +CSM R+GCAG+
Sbjct: 1 MEGNGTFPFFSQFSSDPGSSAAGFNLSSAAGFYGCSSCSMLAMLFIQENSRAGCAGT 57
>06_01_0759 + 5674785-5674807,5675276-5675528,5675863-5676126
Length = 179
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 158 LRSFGLVLFVALRARTVRWRHGVVMFLPQLHVLDVVGPAVGV 33
LR ++ VA R V W H V L Q ++V+G VGV
Sbjct: 113 LRVNSIMEVVATRLPMVTWPHSVDQLLNQKMAVEVLGIGVGV 154
>04_04_1347 +
32803664-32803796,32803891-32804093,32804202-32804383,
32804514-32804798,32804901-32804959,32805052-32805088,
32805186-32805257,32805336-32806005
Length = 546
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -1
Query: 451 EVKSRNSEDGEVQYGLVSRRWGLAACSRGRPPGTPHCPRASRV 323
++ R GEV + + W C PPG+ C RV
Sbjct: 414 DMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRV 456
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 132 KQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPLKDDEIKLE 260
K + + EP+ D E +++ + SGK ++ E K DE KLE
Sbjct: 1222 KFSSKRAREPDSDAESEIEDIVISGKSTSNSLESPKCDEAKLE 1264
>11_06_0073 + 19817084-19817388,19817777-19818023
Length = 183
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 171 SLCSA--PQFWPCSVCCSPSPDRPLAA 97
++CSA P F C + C+P+ DRP+ +
Sbjct: 138 AVCSAWFPAFTNCRISCTPAFDRPITS 164
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 108 DGPGSESNKQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPLKD 242
DG G+E + E N D ++D+ V + +G K LKD
Sbjct: 59 DGEGNEDTNDDVDIDDEGNEDTDVDINVRVENGAPETRGKTKLKD 103
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 108 DGPGSESNKQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPLKD 242
DG G+E + E N D ++D+ V + +G K LKD
Sbjct: 59 DGEGNEDTNDDVDIDDEGNEDTDVDINVRVENGAPETRGKTKLKD 103
>04_04_0549 - 26179668-26181176
Length = 502
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 150 FWPCSVCCSPSPDRPLAA 97
F P S+CCSP+ D P AA
Sbjct: 259 FGPVSLCCSPALDDPRAA 276
>04_04_1112 + 30984925-30985101,30985204-30985851
Length = 274
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 363 RPRLHAASPQRL--DTSP-----YWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLK 515
RPRL AAS RL T+P Y SP+ + RD+ RY + + + K R+K
Sbjct: 38 RPRLAAASWSRLRLQTAPRSSQAYDNSPADDRRDVGDRYRDAAEEAKEATGDAKERVK 95
>01_01_1139 -
9024609-9024708,9024832-9024910,9025083-9025252,
9025339-9025451,9025518-9025586,9025867-9025944,
9026022-9026084,9026590-9026670,9027166-9027222,
9027352-9027705
Length = 387
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 397 RRWGLAACSRGRPPGTPHCPRASR 326
RR AAC RPP TP P A R
Sbjct: 4 RRVDAAACDSWRPPPTPPPPHARR 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,494,948
Number of Sequences: 37544
Number of extensions: 411418
Number of successful extensions: 1654
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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