Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0536
(595 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 47 4e-05
AB029032-1|BAA83061.2| 3086|Homo sapiens KIAA1109 protein protein. 47 4e-05
AK123643-1|BAC85669.1| 250|Homo sapiens protein ( Homo sapiens ... 33 0.76
AM050963-1|CAJ19500.1| 113|Homo sapiens immunoglobulin heavy ch... 32 1.3
Y19209-1|CAB76829.1| 600|Homo sapiens type II hair keratin 3 pr... 31 2.3
BC069647-1|AAH69647.1| 600|Homo sapiens keratin 84 protein. 31 2.3
AJ628420-1|CAF31524.1| 598|Homo sapiens type II hair keratin 4 ... 31 3.1
X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor... 31 4.1
X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor... 30 5.4
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1... 30 5.4
Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor... 30 7.1
U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor... 30 7.1
EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear fact... 30 7.1
BC110813-1|AAI10814.1| 519|Homo sapiens cAMP responsive element... 30 7.1
BC037281-1|AAH37281.1| 215|Homo sapiens LOC439951 protein protein. 30 7.1
AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear fact... 30 7.1
AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear fact... 30 7.1
AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear fact... 30 7.1
AK131517-1|BAD18659.1| 460|Homo sapiens protein ( Homo sapiens ... 30 7.1
AJ549387-1|CAD79347.1| 519|Homo sapiens basic transcription fac... 30 7.1
AJ549094-1|CAD79344.1| 396|Homo sapiens FUS/BBF2H7 protein prot... 30 7.1
AJ549093-1|CAD79343.1| 396|Homo sapiens FUS/BBF2H7 protein prot... 30 7.1
AJ549092-1|CAD79342.1| 519|Homo sapiens basic transcription fac... 30 7.1
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 29 9.4
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 29 9.4
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 29 9.4
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 29 9.4
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 29 9.4
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 29 9.4
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 29 9.4
AB065462-1|BAC05721.1| 964|Homo sapiens seven transmembrane hel... 29 9.4
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 47.2 bits (107), Expect = 4e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PGSESNKQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPLKD-DEIKL 257
P + N+ E NIDFELD++V I+SGKCVLH L++ D+I L
Sbjct: 3772 PTTPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISL 3820
Score = 39.1 bits (87), Expect = 0.012
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 413 LDLTVFRVPGLDLKVHYESKTVPEEVPS 496
L+ TVF +PG+D+K+HY SKT+ E P+
Sbjct: 3869 LETTVFYIPGVDVKLHYNSKTLKTESPN 3896
>AB029032-1|BAA83061.2| 3086|Homo sapiens KIAA1109 protein protein.
Length = 3086
Score = 47.2 bits (107), Expect = 4e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 PGSESNKQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPLKD-DEIKL 257
P + N+ E NIDFELD++V I+SGKCVLH L++ D+I L
Sbjct: 1853 PTTPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISL 1901
Score = 39.1 bits (87), Expect = 0.012
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 413 LDLTVFRVPGLDLKVHYESKTVPEEVPS 496
L+ TVF +PG+D+K+HY SKT+ E P+
Sbjct: 1950 LETTVFYIPGVDVKLHYNSKTLKTESPN 1977
>AK123643-1|BAC85669.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ41649 fis, clone FEBRA2024343. ).
Length = 250
Score = 33.1 bits (72), Expect = 0.76
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 75 RKKHDHSVPPADGPGSESNKQNKAKTAEPNIDFELDV 185
R HDHS PP G G E+N ++ K P + LD+
Sbjct: 125 RNLHDHSTPP-QGTGRENNGSSRTKVTFPRVSCCLDL 160
>AM050963-1|CAJ19500.1| 113|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 113
Score = 32.3 bits (70), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 463 VMYLEVKSRNSEDGEVQYGLVSRRWGLAACSRG 365
+ YL++ S +ED V Y + RWGL CS G
Sbjct: 65 IAYLQMNSLKTEDTAVYYCTRALRWGLGYCSGG 97
>Y19209-1|CAB76829.1| 600|Homo sapiens type II hair keratin 3
protein.
Length = 600
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -1
Query: 262 PSNLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFCLLLSEPGPSAGGTEWSC 83
P N+ SS +G LVC + TL+ + GS+ + +L+ GPS GG +
Sbjct: 482 PVNISVSSSRGGLVCGPEPLVAGSTLSRGGVTFSGSSSVCATSGVLASCGPSLGGARVA- 540
Query: 82 FFRSCTCSMSSGQRSG 35
+ +S+G RSG
Sbjct: 541 --PATGDLLSTGTRSG 554
>BC069647-1|AAH69647.1| 600|Homo sapiens keratin 84 protein.
Length = 600
Score = 31.5 bits (68), Expect = 2.3
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -1
Query: 262 PSNLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFCLLLSEPGPSAGGTEWSC 83
P N+ SS +G LVC + TL+ + GS+ + +L+ GPS GG +
Sbjct: 482 PVNISVSSSRGGLVCGPEPLVAGSTLSRGGVTFSGSSSVCATSGVLASCGPSLGGARVA- 540
Query: 82 FFRSCTCSMSSGQRSG 35
+ +S+G RSG
Sbjct: 541 --PATGDLLSTGTRSG 554
>AJ628420-1|CAF31524.1| 598|Homo sapiens type II hair keratin 4
protein.
Length = 598
Score = 31.1 bits (67), Expect = 3.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 262 PSNLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFCLLLSEPGPSAGG 98
P N+ SS +G LVC + TL+ + GS+ + +L+ GPS GG
Sbjct: 480 PVNISVSSSRGGLVCGPEPLVAGSTLSRGGVTFSGSSSVCATSGVLASCGPSLGG 534
>X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor 4
protein.
Length = 465
Score = 30.7 bits (66), Expect = 4.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 387 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGASGSEPYKLLPGAVA 445
Query: 462 TSRKP 476
T KP
Sbjct: 446 TIVKP 450
>X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor 4B
protein.
Length = 465
Score = 30.3 bits (65), Expect = 5.4
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 387 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSESYKLLPGAVA 445
Query: 462 TSRKP 476
T KP
Sbjct: 446 TIVKP 450
>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
protein.
Length = 3530
Score = 30.3 bits (65), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 371 PWATPRHPPLPPR*QGWELQYQSLTDPQMLTDRRAY 264
PWA P H P P+ GW P++ D A+
Sbjct: 703 PWAAPAHVPPAPQASGWAFVEPPAVSPEVPPDLLAF 738
>Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor 4
alpha (HNF4alpha4) protein.
Length = 504
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 426 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 484
Query: 462 TSRKP 476
T KP
Sbjct: 485 TIVKP 489
>U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor
4-alpha protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 438 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 496
Query: 462 TSRKP 476
T KP
Sbjct: 497 TIVKP 501
>EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 396 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 454
Query: 462 TSRKP 476
T KP
Sbjct: 455 TIVKP 459
>BC110813-1|AAI10814.1| 519|Homo sapiens cAMP responsive element
binding protein 3-like 2 protein.
Length = 519
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 239 PRAPSALSSSPLLTAPHKLQGSG 261
>BC037281-1|AAH37281.1| 215|Homo sapiens LOC439951 protein protein.
Length = 215
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/54 (38%), Positives = 22/54 (40%)
Frame = +3
Query: 321 PTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYITSRKPYR 482
P L A G + G R SPQR PYW P R L SR R P R
Sbjct: 120 PRLRASGPARLTGRRQ----PSPQRPQPPPYWRGPFPAARALRSRTPAVRAPAR 169
>AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear factor
4 alpha, transcript variant 8 protein.
Length = 452
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 374 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 432
Query: 462 TSRKP 476
T KP
Sbjct: 433 TIVKP 437
>AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 467
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 389 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 447
Query: 462 TSRKP 476
T KP
Sbjct: 448 TIVKP 452
>AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 29.9 bits (64), Expect = 7.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 282 QHLGVCQRLVLQLPTLLARGQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYI 461
+H+G + +PT L+ GQ RPR AA+P+ SP S S ++ L
Sbjct: 396 EHMGTNVIVANTMPTHLSNGQM-CEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVA 454
Query: 462 TSRKP 476
T KP
Sbjct: 455 TIVKP 459
>AK131517-1|BAD18659.1| 460|Homo sapiens protein ( Homo sapiens
cDNA FLJ16743 fis, clone CTONG2003348, moderately
similar to Mus musculus mRNA for OASIS protein. ).
Length = 460
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 240 PRAPSALSSSPLLTAPHKLQGSG 262
>AJ549387-1|CAD79347.1| 519|Homo sapiens basic transcription factor
2 homologue protein.
Length = 519
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 239 PRAPSALSSSPLLTAPHKLQGSG 261
>AJ549094-1|CAD79344.1| 396|Homo sapiens FUS/BBF2H7 protein
protein.
Length = 396
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 116 PRAPSALSSSPLLTAPHKLQGSG 138
>AJ549093-1|CAD79343.1| 396|Homo sapiens FUS/BBF2H7 protein
protein.
Length = 396
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 116 PRAPSALSSSPLLTAPHKLQGSG 138
>AJ549092-1|CAD79342.1| 519|Homo sapiens basic transcription factor
2 homologue protein.
Length = 519
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 379 PQAPSA--STPARTGPHRLQSSG 441
P+APSA S+P T PH+LQ SG
Sbjct: 239 PRAPSALSSSPLLTAPHKLQGSG 261
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
Query: 528 QES 536
+
Sbjct: 300 SSN 302
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
Query: 528 QES 536
+
Sbjct: 300 SSN 302
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
Query: 528 QES 536
+
Sbjct: 300 SSN 302
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
Query: 528 QES 536
+
Sbjct: 300 SSN 302
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 218 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 276
Query: 528 QES 536
+
Sbjct: 277 SSN 279
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 164 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 222
Query: 528 QES 536
+
Sbjct: 223 SSN 225
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 354 PGGRPRLHAASPQR--LDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRN 527
P RP SP R L P W R SR R P RR+ R P RR SR+
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
Query: 528 QES 536
+
Sbjct: 300 SSN 302
>AB065462-1|BAC05721.1| 964|Homo sapiens seven transmembrane helix
receptor protein.
Length = 964
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 339 GQWGVPGGRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKE 518
G+W P LH + P + T Y PS S + S P+ R R P+RRL
Sbjct: 363 GRWPRSDATPSLHPSPPAGVPT--YGAQPS-----FLSTHRASPCPHPRSCRAPRRRLHC 415
Query: 519 SRN 527
+RN
Sbjct: 416 TRN 418
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,858,511
Number of Sequences: 237096
Number of extensions: 2128058
Number of successful extensions: 8787
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 8020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8778
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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