Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0536
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    37   0.009
AC024776-9|AAK68462.1|  244|Caenorhabditis elegans Set (trithora...    32   0.27 
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z71185-14|CAA94912.1|  591|Caenorhabditis elegans Hypothetical p...    29   1.9  
AL021475-4|CAA16315.1|  591|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    28   5.8  
Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +3

Query: 120 SESNKQNKAKTAE-PNIDFELDVKVHINSGKCVLHTKEPLKDDEIKLEGVCASVGQHLGV 296
           S+ N ++     +   ++F LDVKV+I SG C L T++    +++ L G+   +  +LG 
Sbjct: 532 SQKNSEDLTTPGDIETVNFNLDVKVNITSGTCTLRTQKKEGANQLALPGILKRL--NLGT 589

Query: 297 CQRLVLQLPTLLARGQWGVPGGRPR-LHAASPQRLDTSPY 413
                +  P ++    + +P    +  H + P    T  +
Sbjct: 590 KDIKAMFEPQIITTTTFSIPSVEIKAYHVSDPSNRSTDEF 629


>AC024776-9|AAK68462.1|  244|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 23,
           isoform a protein.
          Length = 244

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 118 PGPSAGGTEWSCFFRSCTCSMSSGQRSGCA 29
           PGP    T+W+  F  C C       +GC+
Sbjct: 11  PGPGISETDWNDVFEGCNCEAECSSAAGCS 40


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 411 YWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRNQESVPVRVDNAAEAFPE 578
           +W + +S  R +       R    + ++HP R+L+E+ +Q + P RVD  + + P+
Sbjct: 243 WWKTTTSASRWVAGPRHPPRFNQNQNWKHPIRKLQETISQTAAPPRVDPVSNSQPK 298


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 360 GRPRLHAASPQRLDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRLKESRNQ 530
           G P   ++S Q  + +PY+ + S+  +  TS+ +  +KPYRR  + P +       Q
Sbjct: 44  GTPNFFSSSAQAYEAAPYYPAKSTAAK-TTSKPV--QKPYRRHHQRPNKAWSSGSQQ 97


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 34  TPTAGPTTSSTCSCGRNMTTP 96
           TPTA PTTS + +  RNMT P
Sbjct: 82  TPTAAPTTSLSSTIVRNMTAP 102


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -1

Query: 322  GSCSTSL*QTPRC*PTDAHTPS-NLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVL 146
            GSC T         P D  T S +     +    VC   FPL  C    + +S  G+  +
Sbjct: 2831 GSCGTQQRFRSCNKPVDTCTCSGSAFEKEYCNLAVCK--FPLASCCSGFTPQSSGGTFCI 2888

Query: 145  ALFCLLLSEPGPSAGGTEWSCFFRSC 68
            +L CL     G   GG   SCFF  C
Sbjct: 2889 SLGCL-----GGFGGGCGSSCFFGLC 2909


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -1

Query: 322  GSCSTSL*QTPRC*PTDAHTPS-NLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVL 146
            GSC T         P D  T S +     +    VC   FPL  C    + +S  G+  +
Sbjct: 2831 GSCGTQQRFRSCNKPVDTCTCSGSAFEKEYCNLAVCK--FPLASCCSGFTPQSSGGTFCI 2888

Query: 145  ALFCLLLSEPGPSAGGTEWSCFFRSC 68
            +L CL     G   GG   SCFF  C
Sbjct: 2889 SLGCL-----GGFGGGCGSSCFFGLC 2909


>Z71185-14|CAA94912.1|  591|Caenorhabditis elegans Hypothetical
           protein Y32F6B.2 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  VPPADGPGSESNKQNKAKTAEPNIDFELDVKVHINS 203
           V PA+ P ++ N QN  KT    IDF  D  + IN+
Sbjct: 290 VKPANDPDAKFNNQNSIKTVITPIDFGDDHTIVINN 325


>AL021475-4|CAA16315.1|  591|Caenorhabditis elegans Hypothetical
           protein Y32F6B.2 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  VPPADGPGSESNKQNKAKTAEPNIDFELDVKVHINS 203
           V PA+ P ++ N QN  KT    IDF  D  + IN+
Sbjct: 290 VKPANDPDAKFNNQNSIKTVITPIDFGDDHTIVINN 325


>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   GVQRQSSLPAHPDRWPDDIEHVQLRKKHDHSVPPADGPGSESNKQNKAKTAEPNIDF 173
           G+Q   +L   P    D+I++V    K++       G G +   + K K   PNIDF
Sbjct: 82  GLQEYKALDIRPTPNRDEIKYVVFPNKNELLTMVTLGIGHDIKAELKLKELYPNIDF 138


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 228 PWC--AARISRC*CAL*RPVQSLCSAPQFWPCSVCCSPSP 115
           P C  A R + C C+  RPV   C AP    C  C  P+P
Sbjct: 172 PCCQPAPRPAPCVCSAPRPVPCRCGAPPM-ECPNCDMPAP 210


>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 39  DRWPDDIEHVQLRKKHDHSVPPADGPGSESNKQNKAKTAEPNIDFELD 182
           D W D ++++          PP + PG+  N + K+   +  +D +LD
Sbjct: 4   DEWGDLLDNLDTEPPQPAPPPPPNLPGNSKNSRPKSSGLDFLLDSDLD 51


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 370 GCTPQAPSASTPARTGPHRLQSSGT 444
           G TPQA  A+TPA T  H+ QS  T
Sbjct: 110 GATPQAAPATTPATTSQHQ-QSIAT 133


>Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -1

Query: 313 STSL*QTPRC*PTDAHTPSNLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFC 134
           +TS+ +   C PT A  PS         S   S+H   LM + TSSS S+F S +  +FC
Sbjct: 41  NTSVFRNKLCLPT-AGCPSPPFLFLLSSS-TDSSHTLSLMPSPTSSSASVFSSHLFFVFC 98

Query: 133 L 131
           +
Sbjct: 99  I 99


>Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -1

Query: 313 STSL*QTPRC*PTDAHTPSNLISSSFKGSLVCSTHFPLLMCTLTSSSKSMFGSAVLALFC 134
           +TS+ +   C PT A  PS         S   S+H   LM + TSSS S+F S +  +FC
Sbjct: 41  NTSVFRNKLCLPT-AGCPSPPFLFLLSSS-TDSSHTLSLMPSPTSSSASVFSSHLFFVFC 98

Query: 133 L 131
           +
Sbjct: 99  I 99


>AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical
           protein Y32H12A.4 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 168 DFELDVKVHINSGKCVLHTKEPLKDDEIKLEGVCASVGQHL 290
           DFE   + H N G  + H  E L+DDE +     A  G ++
Sbjct: 152 DFEKKRRAHYNEGAALKHHPE-LEDDEEEATAAAAGAGGNM 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,403
Number of Sequences: 27780
Number of extensions: 314512
Number of successful extensions: 1220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)