Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0536
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54280.1 68418.m06761 myosin heavy chain, putative similar to... 30 1.3
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 30 1.3
At2g40070.1 68415.m04923 expressed protein 29 2.3
At1g51580.1 68414.m05806 KH domain-containing protein 29 3.1
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 28 5.4
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N... 28 5.4
At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.4
At2g40935.1 68415.m05053 expressed protein low similarity to PGP... 28 5.4
At1g18160.1 68414.m02256 protein kinase family protein contains ... 28 5.4
At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger) fa... 27 7.1
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein... 27 9.4
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein... 27 9.4
>At5g54280.1 68418.m06761 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499045|emb|CAA84065
Length = 1030
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 387 PQRLDTSPYWTSPSSEFRDLTSRYITSRKPYRRKFRHPKRRL 512
PQ P EFR L R+ T +K Y+ + R K RL
Sbjct: 971 PQATPNGQQQQHPEDEFRRLKLRFETWKKDYKARLRDTKARL 1012
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 375 HAASPQRLDTSPYWTSPSSEFRDLTSRYITSRKPY-RRKFRHPKRRLKESR 524
H SP R D SP+ S E RD S Y R PY K H ++R R
Sbjct: 421 HGHSPSRSDWSPHDRSRYHENRD-RSPYARERSPYIFEKSSHARKRSPRDR 470
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 348 GVPGGRPRLHAASPQRLDTSPYWTSPSS 431
G PGGRPR + SP R +P ++S SS
Sbjct: 417 GPPGGRPRRQSCSPSR-GRAPMYSSGSS 443
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +3
Query: 75 RKKHDHSVPPADGPGSESNKQNKAKTAEPNIDFELDVKVHINSGKCVLHTKEPL--KDDE 248
+KK + +V ++ PGSE KQ K + D + ++ +L E + DD
Sbjct: 75 KKKDESNVCDSENPGSEEPKQEKGSECAGTSGGD-DEEAPSSAQMALLRVFERIVFGDDA 133
Query: 249 IKLEGVCASVGQHLGVCQRLVL--QLPTLLARG 341
++G G+ G+C+ +V Q+ L+++G
Sbjct: 134 ATVDGDELDKGESEGLCRMIVRGNQVDYLMSKG 166
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 93 SVPPADGPGSESNKQNKAKTAEP 161
S PP+D P ++S+ ++KA+ EP
Sbjct: 43 SPPPSDSPANQSSSKSKAEPDEP 65
>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
NADPH oxidase, putative similar to respiratory burst
oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
from Arabidopsis thaliana, respiratory burst oxidase
homolog [GI:16549087] from Solanum tuberosum; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 941
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 33 HPDRWPDDIEHVQLRKKHDHSVPPADGPGSESNKQNKAKTAEPNIDFELDVKVHINS 203
H DRW D+ + S+P P S+ + + E I+F V ++I+S
Sbjct: 10 HNDRWGSDLASAGEFTQSFPSLPATYSPSPSSSSSSGEELLEVTIEFPSGVIINIDS 66
>At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase
family protein low similarity to alkB protein
[Escherichia coli][SP|P05050], alkB [Caulobacter
crescentus][GI:2055386]; contains Pfam domain PF03171
2OG-Fe(II) oxygenase superfamily
Length = 452
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 60 EHVQLRKKHDHSVPP-ADGPGSESNKQNKA 146
++V+L +H + P ADGPG+ SN+ + +
Sbjct: 173 KNVELSSVENHKIAPKADGPGNSSNESSSS 202
>At2g40935.1 68415.m05053 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 190
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 72 LRKKHDHSVPPADGPGSESNKQNKAKTAEPNID 170
+++K H VPP+ P ++S+ + +T PN++
Sbjct: 1 MKEKKGHYVPPSYIPLTQSDADTEVETTTPNLE 33
>At1g18160.1 68414.m02256 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 992
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 108 DGPGSESNKQNKAKTAEPN 164
DG GS SN+ NK+ AEP+
Sbjct: 21 DGEGSVSNRSNKSSDAEPS 39
>At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 217
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 466 VENRTGGSSVTPNDASRKVGTKK 534
V+N+TGGSSV+ D+ R++ T++
Sbjct: 173 VDNKTGGSSVSRLDSFRRILTRE 195
>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 414
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 315 QLPTLLARGQ--WG--VPGGRPRLHAASPQRLDTSPYWTSPSSE--FRDLTSRYITSRK 473
+LP + A G+ W VP R + P R+ TS YW + ++ R TSR I +K
Sbjct: 95 ELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIGLKK 153
>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 379
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 315 QLPTLLARGQ--WG--VPGGRPRLHAASPQRLDTSPYWTSPSSE--FRDLTSRYITSRK 473
+LP + A G+ W VP R + P R+ TS YW + ++ R TSR I +K
Sbjct: 95 ELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIGLKK 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,572
Number of Sequences: 28952
Number of extensions: 290604
Number of successful extensions: 1046
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -